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C4orf3 chromosome 4 open reading frame 3 [ Homo sapiens (human) ]

Gene ID: 401152, updated on 4-Jul-2021

Summary

Official Symbol
C4orf3provided by HGNC
Official Full Name
chromosome 4 open reading frame 3provided by HGNC
Primary source
HGNC:HGNC:19225
See related
Ensembl:ENSG00000164096
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ALN; HCVFTP1
Expression
Ubiquitous expression in esophagus (RPKM 59.1), fat (RPKM 46.0) and 25 other tissues See more
Orthologs
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Genomic context

See C4orf3 in Genome Data Viewer
Location:
4q26
Exon count:
3
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 4 NC_000004.12 (119296419..119304445, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (120217574..120225600, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101929762 Neighboring gene mitochondrial ribosomal protein L42 pseudogene 1 Neighboring gene ubiquitin specific peptidase 53 Neighboring gene fatty acid binding protein 2 Neighboring gene kelch like family member 2 pseudogene 1 Neighboring gene RNA, U4 small nuclear 33, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
uncharacterized protein C4orf3
Names
HCV F-transactivated protein 1
another-regulin
hepatitis C virus F protein-transactivated protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001001701.4NP_001001701.2  uncharacterized protein C4orf3 isoform 2

    See identical proteins and their annotated locations for NP_001001701.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR, lacks a portion of the 5' coding region, and uses a downstream start codon, compared to variant 1. The encoded isoform (2) is shorter at the N-terminus, compared to isoform 1.
    Source sequence(s)
    AK024537, AK025703, BC017399, BU739784, CN361054, DA353224
    Consensus CDS
    CCDS43266.1
    UniProtKB/Swiss-Prot
    Q8WVX3
    Related
    ENSP00000485697.1, ENST00000504110.2
  2. NM_001170330.1NP_001163801.1  uncharacterized protein C4orf3 isoform 1

    See identical proteins and their annotated locations for NP_001163801.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AC092656, AY605045, BU739784
    Consensus CDS
    CCDS54798.1
    UniProtKB/Swiss-Prot
    Q8WVX3
    Related
    ENSP00000382026.4, ENST00000399075.6

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p13 Primary Assembly

    Range
    119296419..119304445 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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