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LINC00885 long intergenic non-protein coding RNA 885 [ Homo sapiens (human) ]

Gene ID: 401109, updated on 12-Oct-2019

Summary

Official Symbol
LINC00885provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 885provided by HGNC
Primary source
HGNC:HGNC:48571
See related
Ensembl:ENSG00000224652
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in skin (RPKM 1.1), placenta (RPKM 0.9) and 7 other tissues See more

Genomic context

See LINC00885 in Genome Data Viewer
Location:
3q29
Exon count:
3
Annotation release Status Assembly Chr Location
109.20190905 current GRCh38.p13 (GCF_000001405.39) 3 NC_000003.12 (196142636..196160890)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (195869474..195887761)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene mucin-1-like Neighboring gene serine/threonine-protein phosphatase 4 regulatory subunit 2-like Neighboring gene transferrin receptor Neighboring gene RNA, U7 small nuclear 18 pseudogene Neighboring gene uncharacterized LOC105374303 Neighboring gene zinc finger DHHC-type containing 19

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_034088.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC139666
    Related
    ENST00000457079.2

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109.20190905

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p13 Primary Assembly

    Range
    196142636..196160890
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001001699.1: Suppressed sequence

    Description
    NM_001001699.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.
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