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ATP13A3-DT ATP13A3 divergent transcript [ Homo sapiens (human) ]

Gene ID: 401106, updated on 25-Jan-2022

Summary

Official Symbol
ATP13A3-DTprovided by HGNC
Official Full Name
ATP13A3 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:48570
See related
AllianceGenome:HGNC:48570
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LINC00884
Expression
Low expression observed in reference dataset See more
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Genomic context

See ATP13A3-DT in Genome Data Viewer
Location:
3q29
Exon count:
2
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 3 NC_000003.12 (194487140..194488545)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (194207869..194209274)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene glycoprotein V platelet Neighboring gene ATPase 13A3 Neighboring gene Sharpr-MPRA regulatory region 12272 Neighboring gene RNA, U6 small nuclear 1101, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Other Names

  • long intergenic non-protein coding RNA 884

Clone Names

  • FLJ34208, FLJ36803, AC046143.7

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_033929.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC108676, CN480877, DA504887, DB267472

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p13 Primary Assembly

    Range
    194487140..194488545
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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