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FOXL2NB FOXL2 neighbor [ Homo sapiens (human) ]

Gene ID: 401089, updated on 12-Aug-2022

Summary

Official Symbol
FOXL2NBprovided by HGNC
Official Full Name
FOXL2 neighborprovided by HGNC
Primary source
HGNC:HGNC:34428
See related
Ensembl:ENSG00000206262 AllianceGenome:HGNC:34428
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C3orf72
Summary
Located in fibrillar center. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in ovary (RPKM 15.2) and endometrium (RPKM 8.8) See more
Orthologs
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Genomic context

See FOXL2NB in Genome Data Viewer
Location:
3q22.3
Exon count:
4
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (138947217..138953990)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (141688209..141694996)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (138666059..138672832)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 3980 Neighboring gene long intergenic non-protein coding RNA 1391 Neighboring gene forkhead box L2 Neighboring gene proline rich 23A Neighboring gene proline rich 23B

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ52231

Gene Ontology Provided by GOA

Component Evidence Code Pubs
located_in fibrillar center IDA
Inferred from Direct Assay
more info
 

General protein information

Preferred Names
FOXL2 neighbor protein
Names
FLJ43329 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_029796.1 RefSeqGene

    Range
    4984..11757
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001040061.3NP_001035150.1  FOXL2 neighbor protein

    See identical proteins and their annotated locations for NP_001035150.1

    Status: VALIDATED

    Source sequence(s)
    AC092947, AC130416, AK125319
    Consensus CDS
    CCDS43155.1
    UniProtKB/Swiss-Prot
    A6NGX0, Q6ZUU3
    Related
    ENSP00000372651.3, ENST00000383165.4

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    138947217..138953990
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005247443.4XP_005247500.1  FOXL2 neighbor protein isoform X2

  2. XM_024453517.2XP_024309285.1  FOXL2 neighbor protein isoform X1

    UniProtKB/TrEMBL
    B7Z962
    Conserved Domains (1) summary
    cl26247
    Location:106185
    DNA_pol3_delta2; DNA polymerase III, delta subunit
  3. XM_024453518.2XP_024309286.1  FOXL2 neighbor protein isoform X1

    UniProtKB/TrEMBL
    B7Z962
    Conserved Domains (1) summary
    cl26247
    Location:106185
    DNA_pol3_delta2; DNA polymerase III, delta subunit
  4. XM_047448095.1XP_047304051.1  FOXL2 neighbor protein isoform X1

    UniProtKB/TrEMBL
    B7Z962

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    141688209..141694996
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)