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IQCF3 IQ motif containing F3 [ Homo sapiens (human) ]

Gene ID: 401067, updated on 26-Oct-2022

Summary

Official Symbol
IQCF3provided by HGNC
Official Full Name
IQ motif containing F3provided by HGNC
Primary source
HGNC:HGNC:31816
See related
Ensembl:ENSG00000229972 AllianceGenome:HGNC:31816
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
Predicted to enable calmodulin binding activity. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis (RPKM 10.2) See more
Orthologs
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Genomic context

See IQCF3 in Genome Data Viewer
Location:
3p21.2
Exon count:
7
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (51826883..51830856)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (51859902..51863875)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (51860899..51864872)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377087 Neighboring gene IQ motif containing F6 Neighboring gene IQ motif containing F4, pseudogene Neighboring gene IQ motif containing F2 Neighboring gene RNA, 7SL, cytoplasmic 504, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables calmodulin binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 

General protein information

Preferred Names
IQ domain-containing protein F3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001085479.3NP_001078948.1  IQ domain-containing protein F3

    See identical proteins and their annotated locations for NP_001078948.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    AA991812, BC171818
    Consensus CDS
    CCDS46837.1
    UniProtKB/Swiss-Prot
    B2RUV0, P0C7M6
    Related
    ENSP00000409373.2, ENST00000437810.7
  2. NM_001207023.2NP_001193952.1  IQ domain-containing protein F3

    See identical proteins and their annotated locations for NP_001193952.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    AA991812, BC146874
    Consensus CDS
    CCDS46837.1
    UniProtKB/Swiss-Prot
    B2RUV0, P0C7M6
    Related
    ENSP00000401767.1, ENST00000446775.5
  3. NM_001393887.1NP_001380816.1  IQ domain-containing protein F3

    Status: VALIDATED

    Source sequence(s)
    AC097636
    Consensus CDS
    CCDS46837.1
    UniProtKB/Swiss-Prot
    B2RUV0
    Related
    ENSP00000402012.2, ENST00000440739.4

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    51826883..51830856
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    51859902..51863875
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)