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LINC01940 long intergenic non-protein coding RNA 1940 [ Homo sapiens (human) ]

Gene ID: 401039, updated on 11-Jun-2021

Summary

Official Symbol
LINC01940provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1940provided by HGNC
Primary source
HGNC:HGNC:52763
See related
Ensembl:ENSG00000227744
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC01940 in Genome Data Viewer
Location:
2q37.3
Exon count:
10
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 2 NC_000002.12 (238919302..238926269, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (239840998..239847965, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100287387 Neighboring gene Sharpr-MPRA regulatory region 8511 Neighboring gene twist family bHLH transcription factor 2 Neighboring gene histone deacetylase 4 Neighboring gene microRNA 4440 Neighboring gene microRNA 4441

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_034162.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC114788, AK125867
    Related
    ENST00000455228.1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p13 Primary Assembly

    Range
    238919302..238926269 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001001698.1: Suppressed sequence

    Description
    NM_001001698.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
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