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PCBP1-AS1 PCBP1 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 400960, updated on 28-Sep-2022

Summary

Official Symbol
PCBP1-AS1provided by HGNC
Official Full Name
PCBP1 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:42948
See related
Ensembl:ENSG00000179818 AllianceGenome:HGNC:42948
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in testis (RPKM 3.5), ovary (RPKM 2.9) and 24 other tissues See more
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Genomic context

See PCBP1-AS1 in Genome Data Viewer
Location:
2p13.3
Exon count:
11
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (69962263..70087015, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (69973985..70098739, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (70189395..70314147, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene aspartic peptidase retroviral like 1 Neighboring gene small nucleolar RNA U13 Neighboring gene Sharpr-MPRA regulatory region 1834 Neighboring gene Sharpr-MPRA regulatory region 12254 Neighboring gene RNA, 7SL, cytoplasmic 470, pseudogene Neighboring gene conserved acetylation island sequence C15 enhancer Neighboring gene uncharacterized LOC124906022 Neighboring gene poly(rC) binding protein 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Genome-wide association study identifies three novel susceptibility loci for severe Acne vulgaris.
EBI GWAS Catalog

General gene information

Markers

Other Names

  • PCBP1 antisense RNA 1 (non-protein coding)

Clone Names

  • AC136007.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_033872.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK308634, BC040598
    Related
    ENST00000435880.6

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    69962263..70087015 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    69973985..70098739 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)