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REL-DT REL divergent transcript [ Homo sapiens (human) ]

Gene ID: 400957, updated on 13-May-2022

Summary

Official Symbol
REL-DTprovided by HGNC
Official Full Name
REL divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:49572
See related
Ensembl:ENSG00000228414 AllianceGenome:HGNC:49572
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LINC01185
Expression
Low expression observed in reference dataset See more
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Genomic context

See REL-DT in Genome Data Viewer
Location:
2p16.1
Exon count:
3
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (60847760..60881314, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (60853584..60887160, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (61074895..61108449, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene poly(A) polymerase gamma Neighboring gene RNA, 7SL, cytoplasmic 632, pseudogene Neighboring gene ribosomal protein L21 pseudogene 33 Neighboring gene REL proto-oncogene, NF-kB subunit Neighboring gene Sharpr-MPRA regulatory region 13586 Neighboring gene RNA, U4 small nuclear 51, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
A genome-wide association study identifies new psoriasis susceptibility loci and an interaction between HLA-C and ERAP1.
EBI GWAS Catalog
Genome-wide association analysis identifies three psoriasis susceptibility loci.
EBI GWAS Catalog
Genome-wide meta-analysis of psoriatic arthritis identifies susceptibility locus at REL.
EBI GWAS Catalog

General gene information

Markers

Other Names

  • long intergenic non-protein coding RNA 1185

Clone Names

  • FLJ16341, AC010733.4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_033980.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010733, AK122786
    Related
    ENST00000452343.1

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    60847760..60881314 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    60853584..60887160 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)