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TPTEP2 TPTE pseudogene 2 [ Homo sapiens (human) ]

Gene ID: 400927, updated on 13-May-2022

Summary

Official Symbol
TPTEP2provided by HGNC
Official Full Name
TPTE pseudogene 2provided by HGNC
Primary source
HGNC:HGNC:53828
See related
AllianceGenome:HGNC:53828
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
Z98749.2
Expression
Ubiquitous expression in testis (RPKM 3.9), fat (RPKM 3.6) and 24 other tissues See more
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Genomic context

See TPTEP2 in Genome Data Viewer
Location:
22q13.1
Exon count:
5
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (38344665..38398926, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (38808957..38863190, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (38740670..38794931, complement)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene transmembrane protein 184B Neighboring gene RNA, 7SL, cytoplasmic 704, pseudogene Neighboring gene TPTEP2-CSNK1E readthrough Neighboring gene casein kinase 1 epsilon Neighboring gene CRISPRi-validated cis-regulatory element chr22.1870 Neighboring gene uncharacterized LOC105373030

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Other Names

  • TPTE and PTEN homologous inositol lipid phosphatase pseudogene
  • transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_002821.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK124064, BI669165, CN357790

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

    Range
    38344665..38398926 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060946.1 Alternate T2T-CHM13v2.0

    Range
    38808957..38863190 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001034843.1: Suppressed sequence

    Description
    NM_001034843.1: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.