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NBPF9 NBPF member 9 [ Homo sapiens (human) ]

Gene ID: 400818, updated on 4-Nov-2022

Summary

Official Symbol
NBPF9provided by HGNC
Official Full Name
NBPF member 9provided by HGNC
Primary source
HGNC:HGNC:31991
See related
Ensembl:ENSG00000269713 MIM:613999; AllianceGenome:HGNC:31991
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
AE01
Summary
This gene is a member of the neuroblastoma breakpoint family (NBPF) which consists of dozens of recently duplicated genes primarily located in segmental duplications on human chromosome 1. This gene family has experienced its greatest expansion within the human lineage and has expanded, to a lesser extent, among primates in general. Members of this gene family are characterized by tandemly repeated copies of DUF1220 protein domains. Gene copy number variations in the human chromosomal region 1q21.1, where most DUF1220 domains are located, have been implicated in a number of developmental and neurogenetic diseases such as microcephaly, macrocephaly, autism, schizophrenia, cognitive disability, congenital heart disease, neuroblastoma, and congenital kidney and urinary tract anomalies. Altered expression of some gene family members is associated with several types of cancer. This gene family contains numerous pseudogenes. [provided by RefSeq, Apr 2013]
Expression
Ubiquitous expression in skin (RPKM 26.6), ovary (RPKM 24.3) and 25 other tissues See more
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Genomic context

See NBPF9 in Genome Data Viewer
Location:
1q21.2
Exon count:
34
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (149052186..149103551, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (145719259..145761198, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (144593688..144832254)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene phosphodiesterase 4D interacting protein Neighboring gene uncharacterized LOC112268272 Neighboring gene RNA, U2 small nuclear 38, pseudogene Neighboring gene profilin-1-like Neighboring gene uncharacterized LOC101929790 Neighboring gene uncharacterized LOC102723348 Neighboring gene uncharacterized LOC124904405

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Clone Names

  • FLJ37711, FLJ60244, KIAA1245

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
neuroblastoma breakpoint family member 9

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001037675.4NP_001032764.2  neuroblastoma breakpoint family member 9 isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks four exons in the 3' coding region, compared to variant 1, and encodes a shorter protein (isoform 2), compared to isoform 1.
    Source sequence(s)
    AC239804
    Consensus CDS
    CCDS72895.1
    UniProtKB/Swiss-Prot
    Q3BBV1
    UniProtKB/TrEMBL
    A0A087WY26, B4DG53
    Conserved Domains (2) summary
    COG0419
    Location:11401
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    pfam06758
    Location:757822
    DUF1220; Repeat of unknown function (DUF1220)
  2. NM_001277444.2NP_001264373.1  neuroblastoma breakpoint family member 9 isoform 1

    See identical proteins and their annotated locations for NP_001264373.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AC239804
    Consensus CDS
    CCDS72896.1
    UniProtKB/Swiss-Prot
    Q3BBV1
    UniProtKB/TrEMBL
    A0A075B761, B4DG53
    Conserved Domains (2) summary
    COG0419
    Location:10401
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    pfam06758
    Location:757822
    DUF1220; Repeat of unknown function (DUF1220)
  3. NM_001388366.1NP_001375295.1  neuroblastoma breakpoint family member 9 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC239804
    Consensus CDS
    CCDS72896.1
    Conserved Domains (2) summary
    COG0419
    Location:10401
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    pfam06758
    Location:757822
    DUF1220; Repeat of unknown function (DUF1220)
  4. NM_001388367.1NP_001375296.1  neuroblastoma breakpoint family member 9 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC239804
    Consensus CDS
    CCDS72896.1
    Related
    ENSP00000513968.1, ENST00000698832.1
    Conserved Domains (2) summary
    COG0419
    Location:10401
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    pfam06758
    Location:757822
    DUF1220; Repeat of unknown function (DUF1220)
  5. NM_001388368.1NP_001375297.1  neuroblastoma breakpoint family member 9 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC239804
    Consensus CDS
    CCDS72896.1
    Related
    ENSP00000513601.1, ENST00000698196.1
    Conserved Domains (2) summary
    COG0419
    Location:10401
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    pfam06758
    Location:757822
    DUF1220; Repeat of unknown function (DUF1220)
  6. NM_001388369.1NP_001375298.1  neuroblastoma breakpoint family member 9 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC239804
    Consensus CDS
    CCDS72896.1
    Conserved Domains (2) summary
    COG0419
    Location:10401
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    pfam06758
    Location:757822
    DUF1220; Repeat of unknown function (DUF1220)
  7. NM_001388370.1NP_001375299.1  neuroblastoma breakpoint family member 9 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC239804
    Consensus CDS
    CCDS72896.1
    Related
    ENSP00000482587.1, ENST00000621645.4
    Conserved Domains (2) summary
    COG0419
    Location:10401
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    pfam06758
    Location:757822
    DUF1220; Repeat of unknown function (DUF1220)
  8. NM_001388371.1NP_001375300.1  neuroblastoma breakpoint family member 9 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC239804
    Conserved Domains (2) summary
    COG0419
    Location:11401
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    pfam06758
    Location:720785
    DUF1220; Repeat of unknown function (DUF1220)
  9. NM_001388372.1NP_001375301.1  neuroblastoma breakpoint family member 9 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC239804
    Consensus CDS
    CCDS72895.1
    Conserved Domains (2) summary
    COG0419
    Location:11401
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    pfam06758
    Location:757822
    DUF1220; Repeat of unknown function (DUF1220)
  10. NM_001388373.1NP_001375302.1  neuroblastoma breakpoint family member 9 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC239804
    Consensus CDS
    CCDS72895.1
    Conserved Domains (2) summary
    COG0419
    Location:11401
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    pfam06758
    Location:757822
    DUF1220; Repeat of unknown function (DUF1220)
  11. NM_001388374.1NP_001375303.1  neuroblastoma breakpoint family member 9 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC239804
    Consensus CDS
    CCDS72895.1
    Conserved Domains (2) summary
    COG0419
    Location:11401
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    pfam06758
    Location:757822
    DUF1220; Repeat of unknown function (DUF1220)
  12. NM_001388375.1NP_001375304.1  neuroblastoma breakpoint family member 9 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC239804
    Consensus CDS
    CCDS72895.1
    Conserved Domains (2) summary
    COG0419
    Location:11401
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    pfam06758
    Location:757822
    DUF1220; Repeat of unknown function (DUF1220)
  13. NM_001388376.1NP_001375305.1  neuroblastoma breakpoint family member 9 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC239804
    Consensus CDS
    CCDS72895.1
    Conserved Domains (2) summary
    COG0419
    Location:11401
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    pfam06758
    Location:757822
    DUF1220; Repeat of unknown function (DUF1220)
  14. NM_001388377.1NP_001375306.1  neuroblastoma breakpoint family member 9 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC239804
    Consensus CDS
    CCDS72895.1
    Conserved Domains (2) summary
    COG0419
    Location:11401
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    pfam06758
    Location:757822
    DUF1220; Repeat of unknown function (DUF1220)
  15. NM_001388378.1NP_001375307.1  neuroblastoma breakpoint family member 9 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC239804
    Consensus CDS
    CCDS72895.1
    Conserved Domains (2) summary
    COG0419
    Location:11401
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    pfam06758
    Location:757822
    DUF1220; Repeat of unknown function (DUF1220)
  16. NM_001388379.1NP_001375308.1  neuroblastoma breakpoint family member 9 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC239804
    Consensus CDS
    CCDS72895.1
    Conserved Domains (2) summary
    COG0419
    Location:11401
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    pfam06758
    Location:757822
    DUF1220; Repeat of unknown function (DUF1220)
  17. NM_001388381.1NP_001375310.1  neuroblastoma breakpoint family member 9 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC239804
    Consensus CDS
    CCDS72895.1
    Conserved Domains (2) summary
    COG0419
    Location:11401
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    pfam06758
    Location:757822
    DUF1220; Repeat of unknown function (DUF1220)
  18. NM_001388382.1NP_001375311.1  neuroblastoma breakpoint family member 9 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC239804
    Consensus CDS
    CCDS72895.1
    Conserved Domains (2) summary
    COG0419
    Location:11401
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    pfam06758
    Location:757822
    DUF1220; Repeat of unknown function (DUF1220)
  19. NM_001388383.1NP_001375312.1  neuroblastoma breakpoint family member 9 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC239804
    Consensus CDS
    CCDS72895.1
    Related
    ENSP00000483900.1, ENST00000613595.4
    Conserved Domains (2) summary
    COG0419
    Location:11401
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    pfam06758
    Location:757822
    DUF1220; Repeat of unknown function (DUF1220)
  20. NM_001388384.1NP_001375313.1  neuroblastoma breakpoint family member 9 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC239804
    Consensus CDS
    CCDS72895.1
    Conserved Domains (2) summary
    COG0419
    Location:11401
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    pfam06758
    Location:757822
    DUF1220; Repeat of unknown function (DUF1220)

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    149052186..149103551 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047420572.1XP_047276528.1  neuroblastoma breakpoint family member 9 isoform X1

  2. XM_047420578.1XP_047276534.1  neuroblastoma breakpoint family member 9 isoform X2

RNA

  1. XR_007060075.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    145719259..145761198 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)