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CLEC20A C-type lectin domain containing 20A [ Homo sapiens (human) ]

Gene ID: 400797, updated on 23-Nov-2021

Summary

Official Symbol
CLEC20Aprovided by HGNC
Official Full Name
C-type lectin domain containing 20Aprovided by HGNC
Primary source
HGNC:HGNC:34521
See related
Ensembl:ENSG00000188585
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LINC00083; NCRNA00083
Expression
Broad expression in testis (RPKM 2.0), lymph node (RPKM 0.7) and 14 other tissues See more
Orthologs
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Genomic context

See CLEC20A in Genome Data Viewer
Location:
1q25.2
Exon count:
10
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (178478153..178499623, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene RAS protein activator like 2 Neighboring gene uncharacterized LOC105371629 Neighboring gene ribosomal protein S14 pseudogene 2 Neighboring gene uncharacterized LOC101928866 Neighboring gene negCOR silencer S4 Neighboring gene testis expressed 35

Genomic regions, transcripts, and products

Genomic Sequence:
NC_000001.11 Chromosome 1 Reference GRCh38.p13 Primary Assembly

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Homology

Clone Names

  • FLJ44005

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
putative C-type lectin domain family 20 member A
Names
C-type lectin domain family 20 member A
long intergenic non-protein coding RNA 83

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001395331.1NP_001382260.1  putative C-type lectin domain family 20 member A precursor

    Status: VALIDATED

    Source sequence(s)
    AL035702, KF455100
    Conserved Domains (2) summary
    cd03602
    Location:22132
    CLECT_1; C-type lectin (CTL)/C-type lectin-like (CTLD) domain subgroup 1; a subgroup of protein domains homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins
    cl02432
    Location:162275
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    178478153..178499623 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035861181.1XP_035717074.1  putative C-type lectin domain family 20 member A isoform X1

    Related
    ENSP00000490899.1, ENST00000623247.2
    Conserved Domains (2) summary
    cd03602
    Location:69179
    CLECT_1; C-type lectin (CTL)/C-type lectin-like (CTLD) domain subgroup 1; a subgroup of protein domains homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins
    cl02432
    Location:209322
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001001689.1: Suppressed sequence

    Description
    NM_001001689.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
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