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LINC00683 long intergenic non-protein coding RNA 683 [ Homo sapiens (human) ]

Gene ID: 400660, updated on 13-May-2022

Summary

Official Symbol
LINC00683provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 683provided by HGNC
Primary source
HGNC:HGNC:44467
See related
Ensembl:ENSG00000266256 AllianceGenome:HGNC:44467
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in testis (RPKM 1.6), endometrium (RPKM 0.4) and 7 other tissues See more
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Genomic context

See LINC00683 in Genome Data Viewer
Location:
18q23
Exon count:
2
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (76619777..76623559)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (76848148..76851931)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 18 NC_000018.9 (74331734..74335516)

Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene zinc finger protein 516 Neighboring gene ZNF516 divergent transcript Neighboring gene long intergenic non-protein coding RNA 908 Neighboring gene long intergenic non-protein coding RNA 1927 Neighboring gene uncharacterized LOC107985151 Neighboring gene uncharacterized LOC105372212

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Clone Names

  • FLJ37638, FLJ45658

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_120419.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC034110
    Related
    ENST00000578803.1

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

    Range
    76619777..76623559
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060942.1 Alternate T2T-CHM13v2.0

    Range
    76848148..76851931
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)