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LINC01538 long intergenic non-protein coding RNA 1538 [ Homo sapiens (human) ]

Gene ID: 400654, updated on 13-May-2022

Summary

Official Symbol
LINC01538provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1538provided by HGNC
Primary source
HGNC:HGNC:51306
See related
Ensembl:ENSG00000266952 AllianceGenome:HGNC:51306
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC01538 in Genome Data Viewer
Location:
18q22.1
Exon count:
3
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (64213082..64260055, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (64418198..64465171, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 18 NC_000018.9 (61880317..61927290, complement)

Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 305 Neighboring gene long intergenic non-protein coding RNA 1924 Neighboring gene uncharacterized LOC124904357 Neighboring gene uncharacterized LOC105372166 Neighboring gene uncharacterized LOC105372167

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Other Names

  • RP11-909B2.1
  • TCONS_00026184

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_033983.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC100848, BC042493, BG722547
    Related
    ENST00000588074.1

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

    Range
    64213082..64260055 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060942.1 Alternate T2T-CHM13v2.0

    Range
    64418198..64465171 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)