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LINC01973 long intergenic non-protein coding RNA 1973 [ Homo sapiens (human) ]

Gene ID: 400624, updated on 19-Aug-2025
Official Symbol
LINC01973provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1973provided by HGNC
Primary source
HGNC:HGNC:52800
See related
Ensembl:ENSG00000204283 AllianceGenome:HGNC:52800
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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See LINC01973 in Genome Data Viewer
Location:
17q25.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2025_08 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (77879001..77884087, complement)
RS_2025_08 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (78772685..78777770, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (75875083..75880169, complement)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75720584-75721084 Neighboring gene long intergenic non-protein coding RNA 1987 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75765255-75765755 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:75766103-75766958 Neighboring gene MPRA-validated peak3013 silencer Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:75786503-75787313 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75792961-75793460 Neighboring gene uncharacterized LOC105371908 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75794738-75795238 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75795239-75795739 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75797657-75798610 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75799563-75800516 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75804770-75805270 Neighboring gene OCT4-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:75806508-75807196 Neighboring gene OCT4-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:75824461-75825107 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9036 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75841537-75842186 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:75842187-75842834 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:75842835-75843484 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75848286-75848891 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75852763-75853262 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75854805-75855306 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75855307-75855806 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12852 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75868565-75869066 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75870617-75871117 Neighboring gene ReSE screen-validated silencer GRCh37_chr17:75872166-75872351 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12853 Neighboring gene uncharacterized LOC107985087 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75886409-75886909 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75887350-75887898 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75903356-75903897 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75912725-75913246 Neighboring gene RNA, U1 small nuclear 80, pseudogene

Go to nucleotide: Graphics FASTA GenBank

  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

GeneRIFs: Gene References Into Functions

Review eQTL and phenotype association data in this region using PheGenI

See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Markers

Clone Names

  • FLJ45079, FLJ46474

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_028337.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC015804
    Related
    ENST00000374983.3

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2025_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    77879001..77884087 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    78772685..78777770 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001001685.1: Suppressed sequence

    Description
    NM_001001685.1: This RefSeq was permanently suppressed because it is now thought that this gene does not encode a protein.
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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