Format

Send to:

Choose Destination

C17orf97 chromosome 17 open reading frame 97 [ Homo sapiens (human) ]

Gene ID: 400566, updated on 5-Aug-2018

Summary

Official Symbol
C17orf97provided by HGNC
Official Full Name
chromosome 17 open reading frame 97provided by HGNC
Primary source
HGNC:HGNC:33800
See related
Ensembl:ENSG00000187624 Vega:OTTHUMG00000132479
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CK20; LIAT1
Expression
Biased expression in testis (RPKM 22.4), thyroid (RPKM 3.9) and 13 other tissues See more
Orthologs

Genomic context

See C17orf97 in Genome Data Viewer
Location:
17p13.3
Exon count:
2
Annotation release Status Assembly Chr Location
109 current GRCh38.p12 (GCF_000001405.38) 17 NC_000017.11 (410327..414666)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (260118..264457)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene rabphilin 3A like (without C2 domains) Neighboring gene uncharacterized LOC100506388 Neighboring gene uncharacterized LOC105371425 Neighboring gene uncharacterized LOC105371430 Neighboring gene refilin B Neighboring gene VPS53, GARP complex subunit Neighboring gene ribosomal protein S4X pseudogene 17

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Jun 15 11:32:44 2016

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Process Evidence Code Pubs
protein arginylation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein arginylation ISS
Inferred from Sequence or Structural Similarity
more info
 

General protein information

Preferred Names
protein LIAT1
Names
ligand of ATE1 protein

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001013672.4NP_001013694.4  protein LIAT1

    See identical proteins and their annotated locations for NP_001013694.4

    Status: VALIDATED

    Source sequence(s)
    AK128660, BC070116, BC141806, BG056786
    Consensus CDS
    CCDS32519.2
    UniProtKB/Swiss-Prot
    Q6ZQX7
    UniProtKB/TrEMBL
    A0A0H4IV28
    Related
    ENSP00000353245.6, OTTHUMP00000216306, ENST00000360127.6, OTTHUMT00000255648
    Conserved Domains (1) summary
    PTZ00131
    Location:165383
    PTZ00131; glycophorin-binding protein; Provisional

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p12 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p12 Primary Assembly

    Range
    410327..414666
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p12 PATCHES

Genomic

  1. NW_017363817.1 Reference GRCh38.p12 PATCHES

    Range
    7690..12029
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center