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LINC02139 long intergenic non-protein coding RNA 2139 [ Homo sapiens (human) ]

Gene ID: 400548, updated on 17-Jun-2024

Summary

Official Symbol
LINC02139provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2139provided by HGNC
Primary source
HGNC:HGNC:52999
See related
Ensembl:ENSG00000278214 AllianceGenome:HGNC:52999
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC02139 in Genome Data Viewer
Location:
16q24.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (85137150..85149443)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (91203223..91215514)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (85170756..85183049)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11260 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11261 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11262 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11263 Neighboring gene uncharacterized LOC105371381 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:85159272-85159794 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:85159795-85160316 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:85170709-85171641 Neighboring gene uncharacterized LOC105371382 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:85180218-85180762 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:85180763-85181307 Neighboring gene CBY1 interacting BAR domain containing 2 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7800 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7801 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11264 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:85187102-85187602 Neighboring gene Sharpr-MPRA regulatory region 15454 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:85204591-85205300 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:85205301-85206012 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:85221161-85222101 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:85224026-85224526 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr16:85233339-85234538 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:85234576-85235312 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:85240619-85241362 Neighboring gene Sharpr-MPRA regulatory region 3131 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:85248283-85248783 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:85254771-85255472 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:85255473-85256172 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11265 Neighboring gene ReSE screen-validated silencer GRCh37_chr16:85259454-85259616 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11266 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11267 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:85261597-85262172 Neighboring gene Gse1 coiled-coil protein Neighboring gene ReSE screen-validated silencer GRCh37_chr16:85267436-85267602 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:85267685-85268542 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7802 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7803 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:85272407-85272982 Neighboring gene microRNA 12128 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:85274317-85275021 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:85292052-85292756 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:85292757-85293460 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:85293461-85294165 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:85300159-85300706 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:85303550-85304252 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:85305185-85306181 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:85308847-85309819 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:85309820-85310793 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:85310794-85311766 Neighboring gene cytochrome c oxidase subunit 6C pseudogene 16

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_033984.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC026469, BC040918
    Related
    ENST00000612023.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    85137150..85149443
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    91203223..91215514
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)