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SERTM1 serine rich and transmembrane domain containing 1 [ Homo sapiens (human) ]

Gene ID: 400120, updated on 22-Sep-2022

Summary

Official Symbol
SERTM1provided by HGNC
Official Full Name
serine rich and transmembrane domain containing 1provided by HGNC
Primary source
HGNC:HGNC:33792
See related
Ensembl:ENSG00000180440 AllianceGenome:HGNC:33792
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C13orf36
Summary
Located in intracellular membrane-bounded organelle. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in brain (RPKM 12.4), endometrium (RPKM 5.9) and 4 other tissues See more
Orthologs
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Genomic context

See SERTM1 in Genome Data Viewer
Location:
13q13.3
Exon count:
2
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (36674020..36697839)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (35893537..35917348)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (37248157..37271976)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124903155 Neighboring gene uncharacterized LOC124903157 Neighboring gene uncharacterized LOC102723490 Neighboring gene uncharacterized LOC124903156 Neighboring gene glyceraldehyde 3 phosphate dehydrogenase pseudogene 34

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC33996

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
is_active_in intracellular membrane-bounded organelle IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in intracellular membrane-bounded organelle IDA
Inferred from Direct Assay
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
serine-rich and transmembrane domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_203451.3NP_982276.2  serine-rich and transmembrane domain-containing protein 1

    See identical proteins and their annotated locations for NP_982276.2

    Status: VALIDATED

    Source sequence(s)
    AL136160, BC036540, BI544475, CA392022, DC425828
    Consensus CDS
    CCDS9358.1
    UniProtKB/Swiss-Prot
    A2A2V5, Q8N469
    Related
    ENSP00000325776.3, ENST00000315190.4
    Conserved Domains (1) summary
    pfam15872
    Location:11106
    SRTM1; Serine-rich and transmembrane domain-containing protein 1

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    36674020..36697839
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    35893537..35917348
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)