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LINC02381 long intergenic non-protein coding RNA 2381 [ Homo sapiens (human) ]

Gene ID: 400043, updated on 17-Feb-2024

Summary

Official Symbol
LINC02381provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2381provided by HGNC
Primary source
HGNC:HGNC:53304
See related
Ensembl:ENSG00000250742 MIM:620723; AllianceGenome:HGNC:53304
Gene type
ncRNA
RefSeq status
PREDICTED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
HMS; lncEPAT
Expression
Broad expression in stomach (RPKM 16.9), ovary (RPKM 12.9) and 19 other tissues See more
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Genomic context

See LINC02381 in Genome Data Viewer
Location:
12q13.13
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (54126071..54132843)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (54091629..54098399)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (54519855..54526627)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC440101 Neighboring gene uncharacterized LOC100240735 Neighboring gene Sharpr-MPRA regulatory region 1856 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6435 Neighboring gene uncharacterized LOC100240734 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:54520229-54520862 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:54520863-54521498 Neighboring gene family with sequence similarity 242 member C Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:54526452-54527376 Neighboring gene ReSE screen-validated silencer GRCh37_chr12:54528656-54528824 Neighboring gene SMUG1 antisense RNA 1 Neighboring gene Sharpr-MPRA regulatory region 1237 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:54556725-54557225 Neighboring gene uncharacterized LOC102724030 Neighboring gene single-strand-selective monofunctional uracil-DNA glycosylase 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Other Names

  • EGFR pathway-activated transcript
  • HOXC10 mRNA stabilizing factor

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_026656.1 RNA Sequence

    Status: PREDICTED

    Source sequence(s)
    BC009385, BI197806, BM714461, BU508046
    Related
    ENST00000508564.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    54126071..54132843
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    54091629..54098399
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)