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GSEC G-quadruplex forming sequence containing lncRNA [ Homo sapiens (human) ]

Gene ID: 399972, updated on 10-Dec-2024

Summary

Official Symbol
GSECprovided by HGNC
Official Full Name
G-quadruplex forming sequence containing lncRNAprovided by HGNC
Primary source
HGNC:HGNC:48645
See related
Ensembl:ENSG00000280832 AllianceGenome:HGNC:48645
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
DCPS-AS1; ST3GAL4-AS1
Expression
Ubiquitous expression in adrenal (RPKM 4.9), appendix (RPKM 2.4) and 21 other tissues See more
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Genomic context

See GSEC in Genome Data Viewer
Location:
11q24.2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (126341716..126355587, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (126373121..126386992, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (126211611..126225482, complement)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124902838 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:126152727-126153534 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5706 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:126162703-126163207 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4049 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5707 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5708 Neighboring gene ReSE screen-validated silencer GRCh37_chr11:126185709-126185914 Neighboring gene TIRAP antisense RNA 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:126197556-126198280 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:126198281-126199003 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:126203043-126203544 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:126204673-126205174 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:126206322-126206884 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:126206885-126207448 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:126207449-126208010 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr11:126208933-126210132 Neighboring gene TIR domain containing adaptor protein Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:126224473-126225216 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:126225217-126225958 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:126225959-126226702 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:126228189-126228930 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:126234481-126234998 Neighboring gene decapping enzyme, scavenger Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:126263623-126264550 Neighboring gene ST3 beta-galactoside alpha-2,3-sialyltransferase 4 Neighboring gene Sharpr-MPRA regulatory region 5906 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4052 Neighboring gene ReSE screen-validated silencer GRCh37_chr11:126304382-126304547 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:126306384-126307384 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:126312444-126313126 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:126314549-126315102 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:126315103-126315656 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:126316770-126317338 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5710 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:126336189-126336738 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:126336739-126337286 Neighboring gene kirre like nephrin family adhesion molecule 3 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:126348793-126349294 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:126356175-126356675 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:126364262-126365032 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:126389731-126390232 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:126393473-126393972 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:126398704-126399204 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:126399205-126399705 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:126413360-126413866 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:126413867-126414371 Neighboring gene KIRREL3 antisense RNA 1 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr11:126434244-126434929 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:126437665-126438165 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:126455626-126456345 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:126456346-126457066 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:126457067-126457785 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:126462463-126462992 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:126462993-126463521 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr11:126471727-126472504 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr11:126477093-126477778 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr11:126477779-126478464 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:126478465-126479149

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Markers

Other Names

  • ST3GAL4 antisense RNA 1 (head to head)

Clone Names

  • FLJ39051

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_033839.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP001318, BF343672, DA746418
    Related
    ENST00000801033.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    126341716..126355587 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    126373121..126386992 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)