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C11orf88 chromosome 11 open reading frame 88 [ Homo sapiens (human) ]

Gene ID: 399949, updated on 13-Feb-2019

Summary

Official Symbol
C11orf88provided by HGNC
Official Full Name
chromosome 11 open reading frame 88provided by HGNC
Primary source
HGNC:HGNC:25061
See related
Ensembl:ENSG00000183644
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in testis (RPKM 9.4), lung (RPKM 6.2) and 1 other tissue See more
Orthologs

Genomic context

See C11orf88 in Genome Data Viewer
Location:
11q23.1
Exon count:
7
Annotation release Status Assembly Chr Location
109 current GRCh38.p12 (GCF_000001405.38) 11 NC_000011.10 (111514785..111537031)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (111385510..111407756)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene BTG anti-proliferation factor 4 Neighboring gene uncharacterized LOC728196 Neighboring gene microRNA 34b Neighboring gene microRNA 34c Neighboring gene layilin Neighboring gene salt inducible kinase 2 Neighboring gene RN7SK pseudogene 273

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Homology

Clone Names

  • FLJ46266

General protein information

Preferred Names
UPF0722 protein C11orf88
Names
hypothetical gene supported by BC039505

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001100388.1NP_001093858.1  UPF0722 protein C11orf88 isoform 2

    See identical proteins and their annotated locations for NP_001093858.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an in-frame exon in the central region, compared to variant 1. The resulting isoform (2) lacks an internal segment, compared to isoform 1.
    Source sequence(s)
    AI829856, AK128145, BC039505
    Consensus CDS
    CCDS41713.1
    UniProtKB/Swiss-Prot
    Q6PI97
    Related
    ENSP00000364768.4, ENST00000375618.8
  2. NM_207430.2NP_997313.2  UPF0722 protein C11orf88 isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longer isoform (1).
    Source sequence(s)
    AI829856, AK128145
    Consensus CDS
    CCDS41712.1
    UniProtKB/Swiss-Prot
    Q6PI97
    Related
    ENSP00000333845.6, ENST00000332814.6

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p12 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p12 Primary Assembly

    Range
    111514785..111537031
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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