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LINC01164 long intergenic non-protein coding RNA 1164 [ Homo sapiens (human) ]

Gene ID: 399827, updated on 4-Mar-2025

Summary

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Official Symbol
LINC01164provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1164provided by HGNC
Primary source
HGNC:HGNC:49533
See related
Ensembl:ENSG00000189275 AllianceGenome:HGNC:49533
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC01164 in Genome Data Viewer
Location:
10q26.3
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (131772398..131790199, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (132706619..132724413, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (133604734..133622535, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene transcription elongation regulator 1 like Neighboring gene uncharacterized LOC105378563 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:133048467-133049038 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:133047894-133048466 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:133049039-133049610 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:133050816-133051316 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:133051317-133051817 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:133057495-133058060 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:133060331-133060830 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:133062787-133063287 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:133075620-133076135 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:133077535-133078178 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr10:133078179-133078822 Neighboring gene uncharacterized LOC101927461 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:133118937-133119655 Neighboring gene OCT4 hESC enhancer GRCh37_chr10:133148496-133148998 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:133187995-133188149 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:133200719-133201394 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:133224627-133225606 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:133239161-133239678 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:133252429-133252973 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:133312838-133313402 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:133314802-133315328 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:133327982-133328482 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:133329536-133330299 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:133344133-133344690 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:133344691-133345247 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:133378011-133378511 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:133379432-133379970 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr10:133467536-133468735 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:133469096-133469596 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:133469597-133470097 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4217 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr10:133479821-133480784 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:133478856-133479820 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr10:133483756-133484448 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2945 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4218 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:133509356-133509977 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:133509978-133510600 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:133510601-133511221 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:133513041-133513838 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:133513839-133514635 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:133517485-133517986 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:133517987-133518486 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:133520926-133521590 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:133521591-133522253 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:133527621-133528122 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:133532727-133533402 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:133534466-133535216 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:133535217-133535966 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4219 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr10:133584321-133585520 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:133588432-133588932 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:133588933-133589433 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:133602465-133602964 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:133605578-133606078 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:133606079-133606579 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr10:133609642-133610841 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:133638117-133638714 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:133638715-133639311 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:133655059-133656046 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:133656047-133657034 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:133657035-133658020 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:133673472-133674089 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:133674090-133674706 Neighboring gene uncharacterized LOC105378565 Neighboring gene uncharacterized LOC105378566

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

Clone Names

  • FLJ46300

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038365.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK128177, AL450307
    Related
    ENST00000341866.3

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    131772398..131790199 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    132706619..132724413 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001001677.1: Suppressed sequence

    Description
    NM_001001677.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Research Materials