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LBX1-AS1 LBX1 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 399806, updated on 10-Oct-2023

Summary

Official Symbol
LBX1-AS1provided by HGNC
Official Full Name
LBX1 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:48678
See related
AllianceGenome:HGNC:48678
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
MUSE
Expression
Restricted expression toward testis (RPKM 1.8) See more
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Genomic context

See LBX1-AS1 in Genome Data Viewer
Location:
10q24.32
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (101229594..101238859)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (102112949..102122207)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (102989351..102998616)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124902491 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:102982447-102983096 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:102985871-102986372 Neighboring gene ladybird homeobox 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:102995795-102996717 Neighboring gene long intergenic non-protein coding RNA 2681 Neighboring gene MPRA-validated peak1078 silencer Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:103020107-103020894 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:103026397-103026935 Neighboring gene uncharacterized LOC124902597

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Other Names

  • LBX1 antisense RNA 1 (head to head)

Clone Names

  • FLJ39379, FLJ41350

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_029380.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AA431734, AK096698, AK123344, AK294034

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    101229594..101238859
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    102112949..102122207
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)