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GATA3-AS1 GATA3 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 399717, updated on 26-Jul-2021

Summary

Official Symbol
GATA3-AS1provided by HGNC
Official Full Name
GATA3 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:33786
See related
Ensembl:ENSG00000197308
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in kidney (RPKM 1.7), urinary bladder (RPKM 0.9) and 4 other tissues See more
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Genomic context

See GATA3-AS1 in Genome Data Viewer
Location:
10p14
Exon count:
2
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 10 NC_000010.11 (8050450..8053484, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (8092413..8095447, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene TATA-box binding protein associated factor 3 Neighboring gene uncharacterized LOC105376394 Neighboring gene uncharacterized LOC107984204 Neighboring gene GATA binding protein 3 Neighboring gene uncharacterized LOC105376395

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

Associated conditions

Description Tests
A genome-wide association study of Hodgkin's lymphoma identifies new susceptibility loci at 2p16.1 (REL), 8q24.21 and 10p14 (GATA3).
GeneReviews: Not available
Variation at 3p24.1 and 6q23.3 influences the risk of Hodgkin's lymphoma.
GeneReviews: Not available

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_024256.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses the distal promoter and is alternatively spliced, compared to variant 1.
    Source sequence(s)
    AK128810, AL390294
    Related
    ENST00000355358.1
  2. NR_104327.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) uses the distal promoter in a complex transcribed region.
    Source sequence(s)
    AL390294, BC036297
    Related
    ENST00000458727.1
  3. NR_104328.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) uses the proximal promoter and overlaps variant 1.
    Source sequence(s)
    AL390294, BC141936
    Related
    ENST00000420815.5
  4. NR_104329.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) uses the proximal promoter and overlaps variant 1. It uses alternate splice sited compared to variant 4.
    Source sequence(s)
    AL390294, BC141937
  5. NR_104330.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (6) uses the proximal promoter and overlaps variant 1. It uses alternate splice sited compared to variant 4.
    Source sequence(s)
    AL390294, BC128075
    Related
    ENST00000438755.1
  6. NR_104336.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) uses the distal promoter and an alternate splice site, compared to variant 1.
    Source sequence(s)
    AL390294, BC036297, BX089350

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p13 Primary Assembly

    Range
    8050450..8053484 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_207423.1: Suppressed sequence

    Description
    NM_207423.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
  2. NR_024255.1: Suppressed sequence

    Description
    NR_024255.1: This RefSeq was suppressed because it represents use of unsupported non-consensus splice sites.
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