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LINC00200 long intergenic non-protein coding RNA 200 [ Homo sapiens (human) ]

Gene ID: 399706, updated on 13-May-2022

Summary

Official Symbol
LINC00200provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 200provided by HGNC
Primary source
HGNC:HGNC:30974
See related
Ensembl:ENSG00000229205 AllianceGenome:HGNC:30974
Gene type
ncRNA
RefSeq status
PREDICTED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C10orf139; NCRNA00200
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC00200 in Genome Data Viewer
Location:
10p15.3
Exon count:
3
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (1159768..1164672)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (1156489..1161402)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (1205708..1210612)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene isopentenyl-diphosphate delta isomerase 1 Neighboring gene WD repeat domain 37 Neighboring gene uncharacterized LOC105376344 Neighboring gene adenosine deaminase RNA specific B2 (inactive) Neighboring gene uncharacterized LOC105376342 Neighboring gene Sharpr-MPRA regulatory region 10920

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_015376.2 RNA Sequence

    Status: PREDICTED

    Source sequence(s)
    AK097673, AL607085, BC133038, BC133040
    Related
    ENST00000425630.2

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    1159768..1164672
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    1156489..1161402
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001010910.1: Suppressed sequence

    Description
    NM_001010910.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.