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RPL13AP17 ribosomal protein L13a pseudogene 17 [ Homo sapiens (human) ]

Gene ID: 399670, updated on 13-May-2022

Summary

Official Symbol
RPL13AP17provided by HGNC
Official Full Name
ribosomal protein L13a pseudogene 17provided by HGNC
Primary source
HGNC:HGNC:36167
See related
Ensembl:ENSG00000231322 AllianceGenome:HGNC:36167
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RPL13A_6_816
Expression
Restricted expression toward lung (RPKM 3.7) See more
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Genomic context

See RPL13AP17 in Genome Data Viewer
Location:
7q21.11
Exon count:
6
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (78347242..78359458)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (79599159..79611356)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (77976559..77988775)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene DDX3 interacting lncRNA 1 Neighboring gene membrane associated guanylate kinase, WW and PDZ domain containing 2 Neighboring gene uncharacterized LOC124901684 Neighboring gene uncharacterized LOC124901683 Neighboring gene ubiquitin-fold modifier conjugating enzyme 1 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Genome-wide association study of anthropometric traits and evidence of interactions with age and study year in Filipino women.
EBI GWAS Catalog

Interactions

Products Interactant Other Gene Complex Source Pubs Description

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_003680.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC006043, BC027852
    Related
    ENST00000450028.5

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    78347242..78359458
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    79599159..79611356
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)