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Lratd2 LRAT domain containing 1 [ Mus musculus (house mouse) ]

Gene ID: 399603, updated on 12-Aug-2019

Summary

Official Symbol
Lratd2provided by MGI
Official Full Name
LRAT domain containing 1provided by MGI
Primary source
MGI:MGI:3026924
See related
Ensembl:ENSMUSG00000072568
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Fam84b; BF642811; D330050I23Rik
Expression
Ubiquitous expression in lung adult (RPKM 18.5), ovary adult (RPKM 9.8) and 26 other tissues See more
Orthologs

Genomic context

See Lratd2 in Genome Data Viewer
Location:
15; 15 D1
Exon count:
3
Annotation release Status Assembly Chr Location
108 current GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (60818996..60826105, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 15 NC_000081.5 (60650551..60656635, complement)

Chromosome 15 - NC_000081.6Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA17 Neighboring gene alpha-1-B glycoprotein pseudogene Neighboring gene RIKEN cDNA 9930014A18 gene Neighboring gene VISTA enhancer mm642 Neighboring gene alpha-1-B glycoprotein

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
cytoplasm ISO
Inferred from Sequence Orthology
more info
 
plasma membrane ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
protein LRATD2
Names
family with sequence similarity 84, member B

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001162926.1NP_001156398.1  protein LRATD2

    Status: VALIDATED

    Source sequence(s)
    AK139928, AK162412, BY426787, CN663980
    Consensus CDS
    CCDS49613.1
    UniProtKB/TrEMBL
    D3YXJ5
    Related
    ENSMUSP00000098200.3, ENSMUST00000100635.4
    Conserved Domains (1) summary
    cl21534
    Location:130212
    NLPC_P60; NlpC/P60 family

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p6 C57BL/6J

Genomic

  1. NC_000081.6 Reference GRCm38.p6 C57BL/6J

    Range
    60818996..60826105 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_384024.4 RNA Sequence

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_207269.1: Suppressed sequence

    Description
    NM_207269.1: This RefSeq was permanently suppressed because it is now thought that this gene does not encode a protein.
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