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ctdnep1.L CTD nuclear envelope phosphatase 1 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 399358, updated on 11-Apr-2024

Summary

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Official Symbol
ctdnep1.L
Official Full Name
CTD nuclear envelope phosphatase 1 L homeolog
Primary source
Xenbase:XB-GENE-6254032
Locus tag
XELAEV_18019667mg
See related
EnsemblRapid:ENSXLAG00005021476
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
net56; ctdnep1; ctdnep1-a; ctdnep1-b; dullard-b
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Genomic context

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Location:
chromosome: 3L
Exon count:
8
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3L NC_054375.1 (161055433..161064546, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 3L NC_030728.1 (143918180..143927510, complement)

Chromosome 3L - NC_054375.1Genomic Context describing neighboring genes Neighboring gene PHD finger protein 23 L homeolog Neighboring gene GABA(A) receptor-associated protein L homeolog Neighboring gene uncharacterized LOC121401683 Neighboring gene claudin 7 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Molecular cloning and characterization of dullard: a novel gene required for neural development. Satow R, et al. Biochem Biophys Res Commun, 2002 Jul 5. PMID 12083771
  2. An in vivo screen to identify candidate neurogenic genes in the developing Xenopus visual system. Bestman JE, et al. Dev Biol, 2015 Dec 15. PMID 25818835, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables myosin phosphatase activity IEA
Inferred from Electronic Annotation
more info
  
enables phosphatase activity IEA
Inferred from Electronic Annotation
more info
  
enables phosphoprotein phosphatase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein serine/threonine phosphatase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein serine/threonine phosphatase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within cell differentiation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within midbrain development IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within nervous system development IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within neural precursor cell proliferation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within nuclear envelope organization ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within positive regulation of triglyceride biosynthetic process ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within protein dephosphorylation ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
part_of Nem1-Spo7 phosphatase complex ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasm ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in endoplasmic reticulum membrane ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in nuclear envelope ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in nuclear membrane ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
CTD nuclear envelope phosphatase 1
Names
dullard
serine/threonine-protein phosphatase dullard
NP_001084192.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001090723.1 → NP_001084192.1  CTD nuclear envelope phosphatase 1

    See identical proteins and their annotated locations for NP_001084192.1

    Status: PROVISIONAL

    Source sequence(s)
    AB084264
    UniProtKB/Swiss-Prot
    Q640I6, Q8JIL9
    UniProtKB/TrEMBL
    A0A974DG65
    Related
    ENSXLAP00005063277.1, ENSXLAT00005064740.1
    Conserved Domains (1) summary
    TIGR02251
    Location:61 → 229
    HIF-SF_euk; Dullard-like phosphatase domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054375.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    161055433..161064546 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8JIL9.1 GenPept UniProtKB/Swiss-Prot:Q8JIL9

Gene LinkOut

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