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csnk2a1.S casein kinase 2, alpha 1 polypeptide S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 399319, updated on 27-Jan-2018

Summary

Symbol
csnk2a1.S
Full Name
casein kinase 2, alpha 1 polypeptide S homeolog
Primary source
Xenbase:XB-GENE-959755
Locus tag
XELAEV_18046367mg
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
ck2a1; csnk2a1

Genomic context

See csnk2a1.S in Genome Data Viewer
Location:
chromosome: 9_10S
Exon count:
14
Annotation release Status Assembly Chr Location
100 current Xenopus_laevis_v2 (GCF_001663975.1) 9_10S NC_030741.1 (17055301..17069920)

Chromosome 9_10S - NC_030741.1Genomic Context describing neighboring genes Neighboring gene sulfiredoxin-1-like Neighboring gene transcription factor 15 S homeolog Neighboring gene cerebral cavernous malformations 2 protein-like Neighboring gene X-linked Kx blood group related 7 S homeolog

Genomic regions, transcripts, and products

Genomic Sequence:
NC_030741.1 Chromosome 9_10S Reference Xenopus_laevis_v2 Primary Assembly

Pathways from BioSystems

  • Adherens junction, organism-specific biosystem (from KEGG)
    Adherens junction, organism-specific biosystemCell-cell adherens junctions (AJs), the most common type of intercellular adhesions, are important for maintaining tissue architecture and cell polarity and can limit cell movement and proliferation....
  • Adherens junction, conserved biosystem (from KEGG)
    Adherens junction, conserved biosystemCell-cell adherens junctions (AJs), the most common type of intercellular adhesions, are important for maintaining tissue architecture and cell polarity and can limit cell movement and proliferation....
  • Herpes simplex infection, organism-specific biosystem (from KEGG)
    Herpes simplex infection, organism-specific biosystemHerpes simplex virus (HSV) infections are very common worldwide, with the prevalence of HSV-1 reaching up to 80%-90%. Primary infection with HSV takes place in the mucosa, followed by the establishme...
  • Herpes simplex infection, conserved biosystem (from KEGG)
    Herpes simplex infection, conserved biosystemHerpes simplex virus (HSV) infections are very common worldwide, with the prevalence of HSV-1 reaching up to 80%-90%. Primary infection with HSV takes place in the mucosa, followed by the establishme...
  • Mitophagy - animal, organism-specific biosystem (from KEGG)
    Mitophagy - animal, organism-specific biosystemMitochondria act as the energy powerhouse of the cell, and are essential for eukaryotic cells to grow and function normally. However, deleterious byproducts of oxidative phosphorylation process calle...
  • Mitophagy - animal, conserved biosystem (from KEGG)
    Mitophagy - animal, conserved biosystemMitochondria act as the energy powerhouse of the cell, and are essential for eukaryotic cells to grow and function normally. However, deleterious byproducts of oxidative phosphorylation process calle...
  • Ribosome biogenesis in eukaryotes, organism-specific biosystem (from KEGG)
    Ribosome biogenesis in eukaryotes, organism-specific biosystemRibosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It...
  • Ribosome biogenesis in eukaryotes, conserved biosystem (from KEGG)
    Ribosome biogenesis in eukaryotes, conserved biosystemRibosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It...
  • Wnt signaling pathway, organism-specific biosystem (from KEGG)
    Wnt signaling pathway, organism-specific biosystemWnt proteins are secreted morphogens that are required for basic developmental processes, such as cell-fate specification, progenitor-cell proliferation and the control of asymmetric cell division, i...
  • Wnt signaling pathway, conserved biosystem (from KEGG)
    Wnt signaling pathway, conserved biosystemWnt proteins are secreted morphogens that are required for basic developmental processes, such as cell-fate specification, progenitor-cell proliferation and the control of asymmetric cell division, i...

General protein information

Preferred Names
casein kinase II subunit alpha
Names
CK II
Casein kinase II subunit alpha'
alpha subunit of casein kinase II
NP_001084124.1
XP_018092882.1
XP_018092883.1
XP_018092884.1
XP_018092885.1
XP_018092886.1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001090655.1NP_001084124.1  casein kinase II subunit alpha

    See identical proteins and their annotated locations for NP_001084124.1

    Status: PROVISIONAL

    Source sequence(s)
    BC072167
    UniProtKB/TrEMBL
    Q6INV5
    Conserved Domains (2) summary
    cd14132
    Location:20325
    STKc_CK2_alpha; Catalytic subunit (alpha) of the Serine/Threonine Kinase, Casein Kinase 2
    pfam00069
    Location:39324
    Pkinase; Protein kinase domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v2 Primary Assembly

Genomic

  1. NC_030741.1 Reference Xenopus_laevis_v2 Primary Assembly

    Range
    17055301..17069920
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018237395.1XP_018092884.1  casein kinase II subunit alpha isoform X2

  2. XM_018237397.1XP_018092886.1  casein kinase II subunit alpha isoform X3

  3. XM_018237394.1XP_018092883.1  casein kinase II subunit alpha isoform X1

    UniProtKB/TrEMBL
    A0A1L8EM01
  4. XM_018237393.1XP_018092882.1  casein kinase II subunit alpha isoform X1

    UniProtKB/TrEMBL
    A0A1L8EM01
  5. XM_018237396.1XP_018092885.1  casein kinase II subunit alpha isoform X2

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