Format

Send to:

Choose Destination

clock.L clock circadian regulator L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 399157, updated on 8-Apr-2017

Summary

Official Symbol
clock.L
Official Full Name
clock circadian regulator L homeolog
Primary source
Xenbase:XB-GENE-6254406
Locus tag
XELAEV_18005292mg
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
clk; Xclk; clock; XClock
Annotation information
Annotation category: partial on reference assembly

Genomic context

See clock.L in Genome Data Viewer
Location:
chromosome: 1L
Exon count:
22
Annotation release Status Assembly Chr Location
100 current Xenopus_laevis_v2 (GCF_001663975.1) 1L NC_030724.1 (32923098..32978755, complement)

Chromosome 1L - NC_030724.1Genomic Context describing neighboring genes Neighboring gene steroid 5 alpha-reductase 3 L homeolog Neighboring gene transmembrane protein 165 L homeolog Neighboring gene neuromedin-U-like Neighboring gene uncharacterized LOC108698484

Genomic regions, transcripts, and products

Genomic Sequence:
NC_030724.1 Chromosome 1L Reference Xenopus_laevis_v2 Primary Assembly

Pathways from BioSystems

  • Herpes simplex infection, organism-specific biosystem (from KEGG)
    Herpes simplex infection, organism-specific biosystemHerpes simplex virus (HSV) infections are very common worldwide, with the prevalence of HSV-1 reaching up to 80%-90%. Primary infection with HSV takes place in the mucosa, followed by the establishme...
  • Herpes simplex infection, conserved biosystem (from KEGG)
    Herpes simplex infection, conserved biosystemHerpes simplex virus (HSV) infections are very common worldwide, with the prevalence of HSV-1 reaching up to 80%-90%. Primary infection with HSV takes place in the mucosa, followed by the establishme...

General protein information

Preferred Names
clock circadian regulator L homeolog
Names
circadian rhythmicity protein CLOCK
clock homolog

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001090385.2NP_001083854.2  clock circadian regulator L homeolog

    See identical proteins and their annotated locations for NP_001083854.2

    Status: PROVISIONAL

    Source sequence(s)
    AF227985
    UniProtKB/TrEMBL
    Q9I9Q6
    Conserved Domains (4) summary
    cd00083
    Location:2377
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
    cd00130
    Location:266364
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam13426
    Location:110211
    PAS_9; PAS domain
    pfam14598
    Location:265368
    PAS_11; PAS domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v2 Primary Assembly

Genomic

  1. NC_030724.1 Reference Xenopus_laevis_v2 Primary Assembly

    Range
    32923098..32978755 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center