bag6.S BAG cochaperone 6 S homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: bag6.S
Official Full Name: BAG cochaperone 6 S homeolog
Primary source: Xenbase:XB-GENE-865204
Locus tag: XELAEV_18042456mg
See related: EnsemblRapid:ENSXLAG00005005639
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: bag6; bat3; Bat-3; bag-6; Scythe; bag6-a; bag6-b; bat3-b; d6s52e
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Genomic context

Location:: chromosome: 8S

Exon count:: 27

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	8S	NC_054386.1 (81507882..81534553)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	8S	NC_030739.1 (79130885..79157623)

Chromosome 8S - NC_054386.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables misfolded protein binding	IEA Inferred from Electronic Annotation more info
enables polyubiquitin modification-dependent protein binding	IEA Inferred from Electronic Annotation more info
enables polyubiquitin modification-dependent protein binding	ISS Inferred from Sequence or Structural Similarity more info
enables proteasome binding	ISS Inferred from Sequence or Structural Similarity more info
enables ribosome binding	ISS Inferred from Sequence or Structural Similarity more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within ERAD pathway	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within apoptotic process	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within brain development	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within chromatin organization	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within endoplasmic reticulum stress-induced pre-emptive quality control	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within internal peptidyl-lysine acetylation	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within kidney development	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within lung development	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within negative regulation of proteasomal ubiquitin-dependent protein catabolic process	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within negative regulation of proteolysis	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within proteasomal protein catabolic process	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within protein stabilization	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within regulation of embryonic development	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within spermatogenesis	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within synaptonemal complex assembly	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within tail-anchored membrane protein insertion into ER membrane	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within ubiquitin-dependent protein catabolic process	ISS Inferred from Sequence or Structural Similarity more info

Component	Evidence Code	Pubs
part_of BAT3 complex	IEA Inferred from Electronic Annotation more info
part_of BAT3 complex	ISS Inferred from Sequence or Structural Similarity more info
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
located_in cytosol	IEA Inferred from Electronic Annotation more info
located_in cytosol	ISS Inferred from Sequence or Structural Similarity more info
located_in extracellular region	IEA Inferred from Electronic Annotation more info
located_in nucleus	IEA Inferred from Electronic Annotation more info
located_in nucleus	ISS Inferred from Sequence or Structural Similarity more info

General protein information

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Preferred Names: large proline-rich protein bag6-B

Names: BCL2 associated athanogene 6 S homeolog; BCL2-associated athanogene 6; HLA-B associated transcript 3; HLA-B-associated transcript 3-B; Large proline-rich protein bat3-B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001089970.1 → NP_001083439.1 large proline-rich protein bag6-B

See identical proteins and their annotated locations for NP_001083439.1

Status: PROVISIONAL

Source sequence(s)

BC060479

UniProtKB/Swiss-Prot

Q6PA26

UniProtKB/TrEMBL

A0A974H612

Related

ENSXLAP00005016790.1, ENSXLAT00005017086.1

Conserved Domains (3) summary

cd01809
Location:7 → 77

Scythe_N; Ubiquitin-like domain of Scythe protein

smart00213
Location:7 → 77

UBQ; Ubiquitin homologues

pfam12057
Location:221 → 335

DUF3538; Domain of unknown function (DUF3538)