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lpin2.S lipin 2 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 398816, updated on 18-Sep-2024

Summary

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Official Symbol
lpin2.S
Official Full Name
lipin 2 S homeolog
Primary source
Xenbase:XB-GENE-1032013
Locus tag
XELAEV_18033623mg
See related
EnsemblRapid:ENSXLAG00005027286
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
lpin2
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Genomic context

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See lpin2.S in Genome Data Viewer
Location:
chromosome: 6S
Exon count:
21
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 6S NC_054382.1 (93232099..93299063)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 6S NC_030735.1 (84541150..84608643)

Chromosome 6S - NC_054382.1Genomic Context describing neighboring genes Neighboring gene myosin light chain 12B S homeolog Neighboring gene myomesin 1 S homeolog Neighboring gene elastin microfibril interfacer 2 S homeolog Neighboring gene uncharacterized LOC121395153

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning. Kırlı K, et al. Elife, 2015 Dec 17. PMID 26673895, Free PMC Article
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Clone Names

  • MGC68631

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables phosphatidate phosphatase activity IEA
Inferred from Electronic Annotation
more info
  
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within cellular response to insulin stimulus IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within fatty acid catabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within triglyceride biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
  
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
lipin 2 S homeolog
NP_001083233.1
XP_018124121.1
XP_041423033.1
XP_041423034.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001089764.1 → NP_001083233.1  lipin 2 S homeolog

    See identical proteins and their annotated locations for NP_001083233.1

    Status: PROVISIONAL

    Source sequence(s)
    BC060016
    UniProtKB/TrEMBL
    A0A974CKQ1, Q6PAW8
    Related
    ENSXLAP00005081107.1, ENSXLAT00005082718.1
    Conserved Domains (4) summary
    pfam04571
    Location:1 → 106
    Lipin_N; lipin, N-terminal conserved region
    pfam08235
    Location:623 → 848
    LNS2; LNS2 (Lipin/Ned1/Smp2)
    pfam15319
    Location:263 → 385
    RHINO; RAD9, RAD1, HUS1-interacting nuclear orphan protein
    pfam16876
    Location:456 → 546
    Lipin_mid; Lipin/Ned1/Smp2 multi-domain protein middle domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054382.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    93232099..93299063
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018268632.2 → XP_018124121.1  lipin 2 S homeolog isoform X3

    UniProtKB/TrEMBL
    A0A974CKQ1, Q6PAW8

  2. XM_041567100.1 → XP_041423034.1  lipin 2 S homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J1L203
    Conserved Domains (2) summary
    smart00775
    Location:699 → 855
    LNS2; This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins
    COG5083
    Location:32 → 160
    SMP2; Phosphatidate phosphatase PAH1, contains Lipin and LNS2 domains. can be involved in plasmid maintenance [Lipid transport and metabolism]

  3. XM_041567099.1 → XP_041423033.1  lipin 2 S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1L0G2
    Related
    ENSXLAP00005081346.1, ENSXLAT00005082957.1
    Conserved Domains (2) summary
    smart00775
    Location:702 → 858
    LNS2; This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins
    COG5083
    Location:32 → 160
    SMP2; Phosphatidate phosphatase PAH1, contains Lipin and LNS2 domains. can be involved in plasmid maintenance [Lipid transport and metabolism]
Nucleotide Protein Strain
Heading Accession and Version

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