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gbx2.2.L gastrulation brain homeobox 2, gene 2 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 397824, updated on 11-Apr-2024

Summary

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Official Symbol
gbx2.2.L
Official Full Name
gastrulation brain homeobox 2, gene 2 L homeolog
Primary source
Xenbase:XB-GENE-866652
Locus tag
XELAEV_18044831mg
See related
EnsemblRapid:ENSXLAG00005021989
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
gbx2; gbx2.2
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Genomic context

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Location:
chromosome: 9_10L
Exon count:
2
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10L NC_054387.1 (83204143..83208542, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10L NC_030740.1 (72703968..72708367, complement)

Chromosome 9_10L - NC_054387.1Genomic Context describing neighboring genes Neighboring gene IQ motif containing with AAA domain 1 L homeolog Neighboring gene ankyrin repeat and SOCS box containing 18 L homeolog Neighboring gene gastrulation brain homeobox 2, gene 1 L homeolog Neighboring gene ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Xenopus laevis homeobox gene Xgbx-2 is an early marker of anteroposterior patterning in the ectoderm. von Bubnoff A, et al. Mech Dev, 1996 Feb. PMID 8652408
  2. Novel HOX, POU and FKH genes expressed during bFGF-induced mesodermal differentiation in Xenopus. King MW, et al. Nucleic Acids Res, 1994 Sep 25. PMID 7937122, Free PMC Article
  3. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
  
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of nervous system development IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleoplasm TAS
Traceable Author Statement
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
homeobox protein GBX-2
Names
XGBX-2
gastrulation and brain-specific homeobox protein 2
homeobox protein Xgbx-2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001087947.2 → NP_001081416.2  homeobox protein GBX-2

    Status: VALIDATED

    Source sequence(s)
    LYTH01181610
    UniProtKB/Swiss-Prot
    Q91814, Q91907
    UniProtKB/TrEMBL
    A0A974H433, B7ZQL1
    Related
    ENSXLAP00005064600.1, ENSXLAT00005066112.1
    Conserved Domains (1) summary
    pfam00046
    Location:242 → 295
    Homeobox; Homeobox domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054387.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    83204143..83208542 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q91907.1 GenPept UniProtKB/Swiss-Prot:Q91907

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.