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myod1.L myogenic differentiation 1 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 397758, updated on 18-Sep-2024

Summary

Official Symbol
myod1.L
Official Full Name
myogenic differentiation 1 L homeolog
Primary source
Xenbase:XB-GENE-6252600
Locus tag
XELAEV_18021662mg
See related
EnsemblRapid:ENSXLAG00005018994
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
MyoD; mf25; XMyoD; XtmyoD; myod1-a; myod1-b
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Genomic context

See myod1.L in Genome Data Viewer
Location:
chromosome: 4L
Exon count:
3
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 4L NC_054377.1 (404724..407489)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 4L NC_030730.1 (406194..408959)

Chromosome 4L - NC_054377.1Genomic Context describing neighboring genes Neighboring gene USH1 protein network component harmonin L homeolog Neighboring gene otogelin L homeolog Neighboring gene potassium voltage-gated channel subfamily C member 1 Neighboring gene secretion regulating guanine nucleotide exchange factor L homeolog Neighboring gene tryptophan hydroxylase 1 L homeolog

Genomic regions, transcripts, and products

General gene information

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 
enables DNA-binding transcription activator activity ISS
Inferred from Sequence or Structural Similarity
more info
 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 
enables E-box binding ISS
Inferred from Sequence or Structural Similarity
more info
 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 
enables promoter-specific chromatin binding ISS
Inferred from Sequence or Structural Similarity
more info
 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
myoblast determination protein 1 homolog B
Names
myogenic factor 25
myogenic factor 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001087823.1NP_001081292.1  myoblast determination protein 1 homolog B

    See identical proteins and their annotated locations for NP_001081292.1

    Status: PROVISIONAL

    Source sequence(s)
    BC073672
    UniProtKB/Swiss-Prot
    P16076
    UniProtKB/TrEMBL
    Q6GN48
    Related
    ENSXLAP00005056035.1, ENSXLAT00005057264.1
    Conserved Domains (3) summary
    smart00520
    Location:11102
    BASIC; Basic domain in HLH proteins of MYOD family
    pfam00010
    Location:98149
    HLH; Helix-loop-helix DNA-binding domain
    pfam12232
    Location:164229
    Myf5; Myogenic determination factor 5

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054377.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    404724..407489
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)