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PHKG1 phosphorylase kinase catalytic subunit gamma 1 [ Sus scrofa (pig) ]

Gene ID: 397548, updated on 1-Mar-2025
Official Symbol
PHKG1provided by VGNC
Official Full Name
phosphorylase kinase catalytic subunit gamma 1provided by VGNC
Primary source
VGNC:VGNC:110698
See related
Ensembl:ENSSSCG00000007744 RGD:14185612
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
PHGK
Expression
Biased expression in longissimus dorsi muscle (RPKM 64.1), psoas major muscle (RPKM 37.3) and 3 other tissues See more
Orthologs
human mouse all
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See PHKG1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
10
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 3 NC_010445.4 (16822042..16831054)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 3 NC_010445.3 (17074784..17082851)

Chromosome 3 - NC_010445.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102162776 Neighboring gene nuclear protein 2, transcriptional regulator Neighboring gene coiled-coil-helix-coiled-coil-helix domain containing 2 Neighboring gene sulfatase modifying factor 2 Neighboring gene chaperonin containing TCP1 subunit 6A Neighboring gene uncharacterized LOC106509672 Neighboring gene transfer RNA lysine (anticodon UUU)

Go to nucleotide: Graphics FASTA GenBank

  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Related articles in PubMed

  1. Association between the splice mutation g.8283C>A of the PHKG1 gene and meat quality traits in Large White pigs. Zappaterra M, et al. Meat Sci, 2019 Feb. PMID 30300804
  2. Muscle glycogen level and occurrence of acid meat in commercial hybrid pigs are regulated by two low-frequency causal variants with large effects and multiple common variants with small effects. Liu X, et al. Genet Sel Evol, 2019 Aug 23. PMID 31443641, Free PMC Article
  3. Detection and mapping of mutations in the porcine phosphoglucomutase 1 (PGM1) and phosphorylase kinase gamma unit (PHKG) genes using F-SSCP-analysis. Looft C, et al. Anim Genet, 1999 Jun. PMID 10443001
  4. A splice mutation in the PHKG1 gene causes high glycogen content and low meat quality in pig skeletal muscle. Ma J, et al. PLoS Genet, 2014 Oct. PMID 25340394, Free PMC Article
  5. The regulatory Ser262 of microtubule-associated protein tau is phosphorylated by phosphorylase kinase. Paudel HK. J Biol Chem, 1997 Jan 17. PMID 8999860

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. findings indicate that the genetic basis of muscle residual glycogen in swine can be mainly attributed to two major genes PRKAG3 and PHKG1
    Title: Muscle glycogen level and occurrence of acid meat in commercial hybrid pigs are regulated by two low-frequency causal variants with large effects and multiple common variants with small effects.
  2. The results suggest an effect of PHKG1 g.8283C>A SNP on meat water-holding cap and color in Italian heavy pigs.
    Title: Association between the splice mutation g.8283C>A of the PHKG1 gene and meat quality traits in Large White pigs.
  3. Deep sequencing of PHKG1 revealed a point mutation (C>A) in a splice acceptor site of intron 9, resulting in a 32-bp deletion in the open reading frame and generating a premature stop codon.
    Title: A splice mutation in the PHKG1 gene causes high glycogen content and low meat quality in pig skeletal muscle.
Submit: New GeneRIF Correction
Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calmodulin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphorylase kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycogen biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of phosphorylase kinase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
phosphorylase b kinase gamma catalytic chain, skeletal muscle/heart isoform
Names
phosphorylase kinase gamma 1
phosphorylase kinase gamma subunit
NP_001280073.1

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001293144.1 → NP_001280073.1  phosphorylase b kinase gamma catalytic chain, skeletal muscle/heart isoform

    See identical proteins and their annotated locations for NP_001280073.1

    Status: PROVISIONAL

    Source sequence(s)
    KJ481911
    UniProtKB/TrEMBL
    A0A024BTL2, A0A4X1SZ00, A0A8D0S2H2, A0A8D0XR53, A0A8D1K2P5, F1RIU5
    Related
    ENSSSCP00000008272.3, ENSSSCT00000008491.4
    Conserved Domains (2) summary
    smart00220
    Location:20 → 288
    S_TKc; Serine/Threonine protein kinases, catalytic domain
    cd14182
    Location:16 → 291
    STKc_PhKG1; Catalytic domain of the Serine/Threonine Kinase, Phosphorylase kinase Gamma 1 subunit

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010445.4 Reference Sscrofa11.1 Primary Assembly

    Range
    16822042..16831054
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases
Research Materials