S100G S100 calcium binding protein G [Sus scrofa (pig)] - Gene

Summary

Official Symbol: S100Gprovided by VGNC
Official Full Name: S100 calcium binding protein Gprovided by VGNC
Primary source: VGNC:VGNC:92548
See related: Ensembl:ENSSSCG00000012147 RGD:13900516
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Sus scrofa
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as: CALB3
Annotation information: Annotation category: partial on reference assembly
Expression: Biased expression in kidney (RPKM 6.6), mixtures (RPKM 1.3) and 1 other tissue See more
Orthologs: human mouse all
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Genomic context

Location:: chromosome: X

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
106	current	Sscrofa11.1 (GCF_000003025.6)	X	NC_010461.5 (13107611..13114213)
105	previous assembly	Sscrofa10.2 (GCF_000003025.5)	X	NC_010461.4 (14053102..14059701)

Chromosome X - NC_010461.5 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Transcriptome data used for gene annotation
Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
BioProject: PRJNA311523
Publication: PMID 27646534
Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

S100G expression in endometrium showed a biphasic pattern of increases on D12 of pregnancy and from D60 to term, and it localized to luminal epithelial cells during early pregnancy and to luminal and glandular cells and chorionic membrane from D30 to term
Title: Dynamic expression of calcium-regulatory molecules, TRPV6 and S100G, in the uterine endometrium during pregnancy in pigs.

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables calcium ion binding	IEA Inferred from Electronic Annotation more info	PubMed
enables transition metal ion binding	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info	PubMed
located_in extracellular space	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: protein S100-G

Names: CABP; calbindin D-9k; calbindin-D9k; vitamin D-dependent calcium-binding protein, intestinal

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_214140.2 → NP_999305.1 protein S100-G

See identical proteins and their annotated locations for NP_999305.1

Status: PROVISIONAL

Source sequence(s)

L13068

UniProtKB/Swiss-Prot

P02632

Related

ENSSSCP00000044898.1, ENSSSCT00000049484.2

Conserved Domains (2) summary

cd00213
Location:12 → 79

S-100; S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 ...

pfam13499
Location:10 → 71

EF-hand_7; EF-hand domain pair