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ABO ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase [ Sus scrofa (pig) ]

Gene ID: 396713, updated on 5-Mar-2024

Summary

Gene symbol
ABO
Gene description
ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Annotation information
Annotation category: partial on reference assembly
Expression
Biased expression in kidney (RPKM 19.0) and mixtures (RPKM 3.1) See more
Orthologs
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Genomic context

See ABO in Genome Data Viewer
Location:
chromosome: 1
Exon count:
7
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 1 NC_010443.5 (272912239..272935316, complement)

Chromosome 1 - NC_010443.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110256503 Neighboring gene odorant binding protein 2B Neighboring gene uncharacterized LOC110256518 Neighboring gene surfeit 6 Neighboring gene mediator complex subunit 22

Genomic regions, transcripts, and products

Genomic Sequence:
NC_010443.5 Chromosome 1 Reference Sscrofa11.1 Primary Assembly

Expression

  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

General gene information

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in lipid glycosylation IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in vesicle IEA
Inferred from Electronic Annotation
more info
PubMed 

General protein information

Preferred Names
histo-blood group ABO system transferase
Names
UDP-GalNAc transferase A
UDP-GalNAc transferase O
blood group A transferase-like
putative blood group A transferase
NP_998964.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_213799.1NP_998964.1  histo-blood group ABO system transferase

    See identical proteins and their annotated locations for NP_998964.1

    Status: PROVISIONAL

    Source sequence(s)
    AF050177
    UniProtKB/TrEMBL
    A0A8D0WW68, A0A8D1D9I7, F8QQE5, O77563
    Conserved Domains (1) summary
    pfam03414
    Location:76363
    Glyco_transf_6; Glycosyltransferase family 6

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010443.5 Reference Sscrofa11.1 Primary Assembly

    Range
    272912239..272935316 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)