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APOB apolipoprotein B [ Gallus gallus (chicken) ]

Gene ID: 396535, updated on 6-Nov-2021

Summary

Official Symbol
APOBprovided by CGNC
Official Full Name
apolipoprotein Bprovided by CGNC
Primary source
CGNC:12347
See related
Ensembl:ENSGALG00000016491
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
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Genomic context

See APOB in Genome Data Viewer
Location:
chromosome: 3
Exon count:
29
Annotation release Status Assembly Chr Location
105 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 3 NC_052534.1 (102035764..102070373, complement)
105 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.1) 3 NC_052575.1 (101799833..101834426, complement)
104 previous assembly GRCg6a (GCF_000002315.5) 3 NC_006090.5 (102199405..102233660, complement)
103 previous assembly Gallus_gallus-5.0 (GCF_000002315.4) 3 NC_006090.4 (102659050..102693303, complement)

Chromosome 3 - NC_052534.1Genomic Context describing neighboring genes Neighboring gene lipid droplet associated hydrolase Neighboring gene uncharacterized LOC121110334 Neighboring gene uncharacterized LOC121110208 Neighboring gene tudor domain containing 15

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables cholesterol transfer activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables heparin binding IEA
Inferred from Electronic Annotation
more info
 
enables low-density lipoprotein particle receptor binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
involved_in cholesterol homeostasis IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in cholesterol metabolic process IEA
Inferred from Electronic Annotation
more info
 
involved_in cholesterol transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in intermembrane lipid transfer IEA
Inferred from Electronic Annotation
more info
 
involved_in lipoprotein transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in triglyceride mobilization IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in lipid droplet IEA
Inferred from Electronic Annotation
more info
 
part_of low-density lipoprotein particle IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
part_of mature chylomicron IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
part_of very-low-density lipoprotein particle IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
apolipoprotein B
Names
apolipoprotein B (including Ag(x) antigen)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001044633.2NP_001038098.2  apolipoprotein B precursor

    Status: PROVISIONAL

    Source sequence(s)
    JAENSK010000070
    Related
    ENSGALP00000026550.4, ENSGALT00000026601.6
    Conserved Domains (3) summary
    COG0419
    Location:21332529
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    TIGR02169
    Location:41164509
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
    cl26969
    Location:38589
    Vitellogenin_N; Lipoprotein amino terminal region

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052534.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    102035764..102070373 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052575.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    101799833..101834426 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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