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HOXD13 homeobox D13 [ Gallus gallus (chicken) ]

Gene ID: 396415, updated on 5-Sep-2025
Symbol
HOXD13provided by CGNC
Full Name
homeobox D13provided by CGNC
Primary source
CGNC:7049
See related
Ensembl:ENSGALG00010024790
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
chox-4G; chox-4.8
Orthologs
human mouse all
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See HOXD13 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
2
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 7 NC_052538.1 (15947381..15949931, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 7 NC_052579.1 (15865106..15867661, complement)

Chromosome 7 - NC_052538.1Genomic Context describing neighboring genes Neighboring gene homeobox D11 Neighboring gene homeobox D12 Neighboring gene even-skipped homeobox 2 Neighboring gene lunapark, ER junction formation factor

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Cloning of full coding chicken cDNAs for the homeobox-containing gene Hoxd-13. Rogina B, et al. Nucleic Acids Res, 1993 Mar 11. PMID 8096637, Free PMC Article
  2. Identification of genes downstream of the Shh signalling in the developing chick wing and syn-expressed with Hoxd13 using microarray and 3D computational analysis. Bangs F, et al. Mech Dev, 2010 Sep-Dec. PMID 20708683
  3. Involvement of the Chox-4 chicken homeobox genes in determination of anteroposterior axial polarity during limb development. Nohno T, et al. Cell, 1991 Mar 22. PMID 1672266
  4. Expression of the homeobox Hox-4 genes and the specification of position in chick wing development. Izpisúa-Belmonte JC, et al. Nature, 1991 Apr 18. PMID 1673231
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Hoxd13 and Sall1 are syn-expressed in the posterior region of early chick wing buds together with 6 novel genes which are likely to be functionally related and represent secondary targets of Shh signalling.
    Title: Identification of genes downstream of the Shh signalling in the developing chick wing and syn-expressed with Hoxd13 using microarray and 3D computational analysis.
Submit: New GeneRIF Correction

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
homeobox protein Hox-D13
Names
Hox D13
homeobox protein Hox-4.8
homeobox protein Hox-4G
homeobox protein hoxd13
NP_990765.1

Length

  • 301

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_205434.1 → NP_990765.1  homeobox protein Hox-D13

    See identical proteins and their annotated locations for NP_990765.1

    Status: PROVISIONAL

    Source sequence(s)
    L09550
    UniProtKB/Swiss-Prot
    P24344, Q90781
    UniProtKB/TrEMBL
    A0A1D5PN52
    Related
    ENSGALP00010037272.1, ENSGALT00010060513.1
    Conserved Domains (2) summary
    pfam00046
    Location:237 → 290
    Homeobox; Homeobox domain
    pfam12284
    Location:20 → 142
    HoxA13_N; Hox protein A13 N terminal

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052538.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    15947381..15949931 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052579.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    15865106..15867661 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P24344.3 GenPept UniProtKB/Swiss-Prot:P24344

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials