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TEF TEF, PAR bZIP transcription factor [ Gallus gallus (chicken) ]

Gene ID: 396342, updated on 25-Sep-2019

Summary

Symbol
TEFprovided by CGNC
Full Name
TEF, PAR bZIP transcription factorprovided by CGNC
Primary source
CGNC:9066
See related
Ensembl:ENSGALG00000011958
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
VBP
Annotation information
Annotation category: partial on reference assembly
Orthologs

Genomic context

See TEF in Genome Data Viewer
Location:
chromosome: 1
Exon count:
5
Annotation release Status Assembly Chr Location
104 current GRCg6a (GCF_000002315.5) 1 NC_006088.5 (49664271..49678819, complement)
103 previous assembly Gallus_gallus-5.0 (GCF_000002315.4) 1 NC_006088.4 (49698489..49713034, complement)
102 previous assembly Gallus_gallus-4.0 (GCF_000002315.3) 1 NC_006088.3 (49521438..49536178, complement)

Chromosome 1 - NC_006088.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107053744 Neighboring gene uncharacterized LOC101748546 Neighboring gene transducer of ERBB2, 2 Neighboring gene zinc finger CCCH-type containing 7B Neighboring gene Ran GTPase activating protein 1 Neighboring gene chondroadherin-like

Genomic regions, transcripts, and products

General gene information

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
DNA binding IDA
Inferred from Direct Assay
more info
PubMed 
DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 
RNA polymerase II regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus IC
Inferred by Curator
more info
PubMed 

General protein information

Preferred Names
transcription factor VBP
Names
thyrotroph embryonic factor homolog
thyrotrophic embryonic factor
vitellogenin binding protein (VBP), beta/beta isoform
vitellogenin gene-binding protein, beta/beta isoform

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_205382.1NP_990713.1  transcription factor VBP

    See identical proteins and their annotated locations for NP_990713.1

    Status: PROVISIONAL

    Source sequence(s)
    U09221
    UniProtKB/Swiss-Prot
    Q92172
    Related
    ENSGALP00000037167.2, ENSGALT00000037963.4
    Conserved Domains (1) summary
    cd14695
    Location:216275
    bZIP_HLF; Basic leucine zipper (bZIP) domain of Hepatic leukemia factor (HLF) and similar proteins: a DNA-binding and dimerization domain

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCg6a Primary Assembly

Genomic

  1. NC_006088.5 Reference GRCg6a Primary Assembly

    Range
    49664271..49678819 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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