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COL3A1 collagen type III alpha 1 chain [ Gallus gallus (chicken) ]

Gene ID: 396340, updated on 14-Aug-2021

Summary

Symbol
COL3A1provided by CGNC
Full Name
collagen type III alpha 1 chainprovided by CGNC
Primary source
CGNC:49759
See related
Ensembl:ENSGALG00000035584
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
collagen
Orthologs
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Genomic context

See COL3A1 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
61
Annotation release Status Assembly Chr Location
105 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 7 NC_052538.1 (671206..785092, complement)
105 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.1) 7 NC_052579.1 (610035..660434, complement)
104 previous assembly GRCg6a (GCF_000002315.5) 7 NC_006094.5 (618383..681637, complement)
103 previous assembly Gallus_gallus-5.0 (GCF_000002315.4) 7 NC_006094.4 (583968..647380, complement)

Chromosome 7 - NC_052538.1Genomic Context describing neighboring genes Neighboring gene WD repeat domain 75 Neighboring gene collagen type V alpha 2 chain Neighboring gene uncharacterized LOC121111311 Neighboring gene uncharacterized LOC121111310 Neighboring gene GULP PTB domain containing engulfment adaptor 1 Neighboring gene uncharacterized LOC121111312

Genomic regions, transcripts, and products

General gene information

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables extracellular matrix structural constituent IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in extracellular matrix organization IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
part_of collagen trimer IEA
Inferred from Electronic Annotation
more info
 
is_active_in extracellular matrix IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in extracellular region TAS
Traceable Author Statement
more info
 
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
collagen alpha-1(III) chain
Names
alpha-1 type III collagen
collagen, type III, alpha 1 (Ehlers-Danlos syndrome type IV, autosomal dominant)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_205380.2NP_990711.2  collagen alpha-1(III) chain precursor

    Status: VALIDATED

    Source sequence(s)
    AADN05000347, AM064821, BM486372, BU414809, CA786382, CO503639, CO506914, CO507410, DR424887, DR426517, L31344
    UniProtKB/TrEMBL
    A0A1D5P959
    Related
    ENSGALP00000051057.1, ENSGALT00000072517.3
    Conserved Domains (3) summary
    pfam01391
    Location:9561015
    Collagen; Collagen triple helix repeat (20 copies)
    pfam00093
    Location:3187
    VWC; von Willebrand factor type C domain
    pfam01410
    Location:12271459
    COLFI; Fibrillar collagen C-terminal domain

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052538.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    671206..785092 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040703363.1XP_040559297.1  collagen alpha-1(III) chain isoform X1

    Conserved Domains (3) summary
    pfam00093
    Location:1369
    VWC; von Willebrand factor type C domain
    pfam01391
    Location:941997
    Collagen; Collagen triple helix repeat (20 copies)
    pfam01410
    Location:12091441
    COLFI; Fibrillar collagen C-terminal domain
  2. XM_040703365.1XP_040559299.1  collagen alpha-1(III) chain isoform X1

    Conserved Domains (3) summary
    pfam00093
    Location:1369
    VWC; von Willebrand factor type C domain
    pfam01391
    Location:941997
    Collagen; Collagen triple helix repeat (20 copies)
    pfam01410
    Location:12091441
    COLFI; Fibrillar collagen C-terminal domain
  3. XM_040703362.1XP_040559296.1  collagen alpha-1(III) chain isoform X1

    Conserved Domains (3) summary
    pfam00093
    Location:1369
    VWC; von Willebrand factor type C domain
    pfam01391
    Location:941997
    Collagen; Collagen triple helix repeat (20 copies)
    pfam01410
    Location:12091441
    COLFI; Fibrillar collagen C-terminal domain
  4. XM_040703364.1XP_040559298.1  collagen alpha-1(III) chain isoform X1

    Conserved Domains (3) summary
    pfam00093
    Location:1369
    VWC; von Willebrand factor type C domain
    pfam01391
    Location:941997
    Collagen; Collagen triple helix repeat (20 copies)
    pfam01410
    Location:12091441
    COLFI; Fibrillar collagen C-terminal domain
  5. XM_015289138.3XP_015144624.1  collagen alpha-1(III) chain isoform X1

    Conserved Domains (3) summary
    pfam00093
    Location:1369
    VWC; von Willebrand factor type C domain
    pfam01391
    Location:941997
    Collagen; Collagen triple helix repeat (20 copies)
    pfam01410
    Location:12091441
    COLFI; Fibrillar collagen C-terminal domain
  6. XM_025152154.2XP_025007922.1  collagen alpha-1(III) chain isoform X2

    Conserved Domains (3) summary
    pfam01391
    Location:931990
    Collagen; Collagen triple helix repeat (20 copies)
    pfam00093
    Location:3187
    VWC; von Willebrand factor type C domain
    pfam01410
    Location:12021434
    COLFI; Fibrillar collagen C-terminal domain

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052579.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    610035..660434 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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