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LMNA lamin A/C [ Gallus gallus (chicken) ]

Gene ID: 396224, updated on 19-May-2023

Summary

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Official Symbol
LMNAprovided by CGNC
Official Full Name
lamin A/Cprovided by CGNC
Primary source
CGNC:49709
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
lamin-A
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See LMNA in Genome Data Viewer
Location:
chromosome: 25
Exon count:
2
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 25 NC_052556.1 (319313..338690, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 25 NC_052597.1 (594936..609911, complement)

Chromosome 25 - NC_052556.1Genomic Context describing neighboring genes Neighboring gene pleckstrin homology domain containing O1 Neighboring gene acidic nuclear phosphoprotein 32 family member E Neighboring gene mex-3 RNA binding family member A Neighboring gene RAB2B, member RAS oncogene family Neighboring gene RAB25, member RAS oncogene family

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Cloning and sequencing of cDNA clones encoding chicken lamins A and B1 and comparison of the primary structures of vertebrate A- and B-type lamins. Peter M, et al. J Mol Biol, 1989 Aug 5. PMID 2795656
  2. Conserved BK channel-protein interactions reveal signals relevant to cell death and survival. Sokolowski B, et al. PLoS One, 2011. PMID 22174833, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables structural constituent of cytoskeleton IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
  
involved_in heterochromatin formation IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 
involved_in nuclear envelope organization IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 
involved_in nuclear migration IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 
involved_in nuclear pore localization IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 
involved_in protein localization to nuclear envelope IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 
Component Evidence Code Pubs
located_in intermediate filament IEA
Inferred from Electronic Annotation
more info
  
is_active_in nuclear envelope IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 
is_active_in nuclear lamina IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 

General protein information

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Preferred Names
lamin-A
Names
lamin A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_205287.1 → NP_990618.1  lamin-A

    See identical proteins and their annotated locations for NP_990618.1

    Status: PROVISIONAL

    Source sequence(s)
    X16879
    UniProtKB/Swiss-Prot
    P13648
    Conserved Domains (5) summary
    pfam00038
    Location:29 → 385
    Filament; Intermediate filament protein
    pfam00932
    Location:434 → 542
    LTD; Lamin Tail Domain
    pfam02050
    Location:237 → 358
    FliJ; Flagellar FliJ protein
    pfam04871
    Location:104 → 204
    Uso1_p115_C; Uso1 / p115 like vesicle tethering protein, C terminal region
    pfam05384
    Location:31 → 141
    DegS; Sensor protein DegS

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052556.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    319313..338690 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052597.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    594936..609911 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P13648.1 GenPept UniProtKB/Swiss-Prot:P13648

Gene LinkOut

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