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TOP1 DNA topoisomerase I [ Gallus gallus (chicken) ]

Gene ID: 396004, updated on 28-Jul-2018

Summary

Symbol
TOP1provided by CGNC
Full Name
DNA topoisomerase Iprovided by CGNC
Primary source
CGNC:2691
See related
Ensembl:ENSGALG00000003681
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs

Genomic context

See TOP1 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
21
Annotation release Status Assembly Chr Location
104 current GRCg6a (GCF_000002315.5) 20 NC_006107.5 (4835314..4897724)
103 previous assembly Gallus_gallus-5.0 (GCF_000002315.4) 20 NC_006107.4 (4981367..5043775)

Chromosome 20 - NC_006107.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101750504 Neighboring gene uncharacterized LOC107054823 Neighboring gene phospholipase C gamma 1 Neighboring gene zinc fingers and homeoboxes 3 Neighboring gene microRNA 1614 Neighboring gene elastin microfibril interfacer 3

Genomic regions, transcripts, and products

General gene information

Homology

General protein information

Preferred Names
DNA topoisomerase 1
Names
topoisomerase (DNA) I
NP_990441.1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_205110.1NP_990441.1  DNA topoisomerase 1

    See identical proteins and their annotated locations for NP_990441.1

    Status: PROVISIONAL

    Source sequence(s)
    AB000407
    UniProtKB/TrEMBL
    P79994
    Related
    ENSGALP00000043331.2, ENSGALT00000042945.2
    Conserved Domains (4) summary
    smart00435
    Location:361738
    TOPEUc; DNA Topoisomerase I (eukaryota)
    pfam01028
    Location:433636
    Topoisom_I; Eukaryotic DNA topoisomerase I, catalytic core
    pfam02919
    Location:216430
    Topoisom_I_N; Eukaryotic DNA topoisomerase I, DNA binding fragment
    pfam14370
    Location:696764
    Topo_C_assoc; C-terminal topoisomerase domain

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCg6a Primary Assembly

Genomic

  1. NC_006107.5 Reference GRCg6a Primary Assembly

    Range
    4835314..4897724
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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