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TBP TATA-box binding protein [ Gallus gallus (chicken) ]

Gene ID: 395995, updated on 14-Feb-2019

Summary

Symbol
TBPprovided by CGNC
Full Name
TATA-box binding proteinprovided by CGNC
Primary source
CGNC:8484
See related
Ensembl:ENSGALG00000011171
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
TBP1
Orthologs

Genomic context

See TBP in Genome Data Viewer
Location:
chromosome: 3
Exon count:
9
Annotation release Status Assembly Chr Location
104 current GRCg6a (GCF_000002315.5) 3 NC_006090.5 (40793361..40804578, complement)
103 previous assembly Gallus_gallus-5.0 (GCF_000002315.4) 3 NC_006090.4 (40844340..40855357, complement)
102 previous assembly Gallus_gallus-4.0 (GCF_000002315.3) 3 NC_006090.3 (40043658..40052477, complement)

Chromosome 3 - NC_006090.5Genomic Context describing neighboring genes Neighboring gene chromosome 3 open reading frame, human C1orf131 Neighboring gene glyceronephosphate O-acyltransferase Neighboring gene programmed cell death 2 Neighboring gene proteasome subunit beta 1 Neighboring gene family with sequence similarity 120B Neighboring gene uncharacterized LOC107053044 Neighboring gene delta like canonical Notch ligand 1

Genomic regions, transcripts, and products

Pathways from BioSystems

General gene information

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
DNA-binding transcription factor activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
RNA polymerase II core promoter sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
RNA polymerase II proximal promoter sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
RNA polymerase III general transcription initiation factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 
RNA polymerase III regulatory region DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
transcription factor binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
RNA polymerase III preinitiation complex assembly IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
transcription by RNA polymerase II ISS
Inferred from Sequence or Structural Similarity
more info
 
transcription by RNA polymerase III ISS
Inferred from Sequence or Structural Similarity
more info
 
Component Evidence Code Pubs
nucleus ISS
Inferred from Sequence or Structural Similarity
more info
 
transcription factor TFIID complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
transcription factor TFIID complex ISS
Inferred from Sequence or Structural Similarity
more info
 
transcription factor TFIIIB complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
transcription factor complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
TATA-box-binding protein
Names
TA-TA binding protein 1
TATA sequence-binding protein
TATA-binding factor
TATA-binding protein
TATA-box factor
transcription initiation factor TFIID TBP subunit

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_205103.1NP_990434.1  TATA-box-binding protein

    See identical proteins and their annotated locations for NP_990434.1

    Status: PROVISIONAL

    Source sequence(s)
    D83127
    UniProtKB/Swiss-Prot
    O13270
    Conserved Domains (2) summary
    PLN00062
    Location:125301
    PLN00062; TATA-box-binding protein; Provisional
    cd04516
    Location:125298
    TBP_eukaryotes; eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation ...

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCg6a Primary Assembly

Genomic

  1. NC_006090.5 Reference GRCg6a Primary Assembly

    Range
    40793361..40804578 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015284047.1XP_015139533.1  TATA-box-binding protein isoform X1

    UniProtKB/TrEMBL
    Q6JLB1
    Related
    ENSGALP00000057495.1, ENSGALT00000048479.2
    Conserved Domains (1) summary
    PLN00062
    Location:125301
    PLN00062; TATA-box-binding protein; Provisional
  2. XM_025148547.1XP_025004315.1  TATA-box-binding protein isoform X1

    Related
    ENSGALP00000060826.2, ENSGALT00000084343.2
    Conserved Domains (1) summary
    PLN00062
    Location:125301
    PLN00062; TATA-box-binding protein; Provisional
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