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RABEP1 rabaptin, RAB GTPase binding effector protein 1 [ Gallus gallus (chicken) ]

Gene ID: 395930, updated on 3-Apr-2024

Summary

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Symbol
RABEP1provided by CGNC
Full Name
rabaptin, RAB GTPase binding effector protein 1provided by CGNC
Primary source
CGNC:49558
See related
Ensembl:ENSGALG00010029256
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 19
Exon count:
20
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 19 NC_052550.1 (3930218..3973985, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 19 NC_052591.1 (3658719..3702324, complement)

Chromosome 19 - NC_052550.1Genomic Context describing neighboring genes Neighboring gene RPA interacting protein Neighboring gene nucleoporin 88 Neighboring gene uncharacterized LOC124417310 Neighboring gene collagen type XXVI alpha 1 chain Neighboring gene intraflagellar transport 22 Neighboring gene uncharacterized LOC107054787

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Neurocrescin: a novel neurite-outgrowth factor secreted by muscle after denervation. Nishimune H, et al. Neuroreport, 1997 Nov 10. PMID 9427343

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables growth factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Golgi to plasma membrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endocytic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
rab GTPase-binding effector protein 1
Names
neurocrescin

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_205057.2 → NP_990388.2  rab GTPase-binding effector protein 1

    Status: PROVISIONAL

    Source sequence(s)
    JAENSK010000323
    UniProtKB/TrEMBL
    A0A8V1AMT9
    Related
    ENSGALP00010043423.1, ENSGALT00010070732.1
    Conserved Domains (2) summary
    COG1196
    Location:535 → 843
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam03528
    Location:11 → 493
    Rabaptin

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052550.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    3930218..3973985 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015295675.4 → XP_015151161.1  rab GTPase-binding effector protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8V1AL72, A0A8V1AMT9
    Related
    ENSGALP00010043421.1, ENSGALT00010070730.1
    Conserved Domains (4) summary
    pfam03528
    Location:11 → 493
    Rabaptin; Rabaptin
    pfam09311
    Location:516 → 802
    Rab5-bind; Rabaptin-like protein
    pfam10267
    Location:611 → 754
    Tmemb_cc2; Predicted transmembrane and coiled-coil 2 protein
    cl14813
    Location:26 → 175
    GluZincin; Peptidase Gluzincin family (thermolysin-like proteinases, TLPs) includes peptidases M1, M2, M3, M4, M13, M32 and M36 (fungalysins)

  2. XM_046902293.1 → XP_046758249.1  rab GTPase-binding effector protein 1 isoform X4

  3. XM_046902292.1 → XP_046758248.1  rab GTPase-binding effector protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8V1AJ31
    Related
    ENSGALP00010043422.1, ENSGALT00010070731.1

  4. XM_025141899.3 → XP_024997667.1  rab GTPase-binding effector protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8V1ABQ6, A0A8V1AH05
    Related
    ENSGALP00010043420.1, ENSGALT00010070729.1
    Conserved Domains (2) summary
    pfam03528
    Location:12 → 493
    Rabaptin
    pfam09311
    Location:531 → 837
    Rab5-bind; Rabaptin-like protein

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052591.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    3658719..3702324 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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