HOXB1 homeobox B1 [Gallus gallus (chicken)] - Gene

Summary

Symbol: HOXB1provided by CGNC
Full Name: homeobox B1provided by CGNC
Primary source: CGNC:10116
See related: Ensembl:ENSGALG00010023454
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Gallus gallus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as: HOXB-1; Ghox-lab
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 27

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
106	current	bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2)	27	NC_052558.1 (3486343..3490154)
106	current	bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2)	27	NC_052599.1 (4628812..4632621)

Chromosome 27 - NC_052558.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific	IEA Inferred from Electronic Annotation more info	PubMed
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in regulation of transcription by RNA polymerase II	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: homeobox protein Hox-B1

Names: homeobox-containing transcription factor Hoxb-1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001080859.5 → NP_001074328.2 homeobox protein Hox-B1 isoform 1

Status: VALIDATED

Description

Transcript Variant: This variant (1) has the long intron. The encoded protein is conserved in birds.

Source sequence(s)

JAENSK010000364

UniProtKB/Swiss-Prot

P31259

UniProtKB/TrEMBL

A0A8V0ZWJ5

Related

ENSGALP00010034759.1, ENSGALT00010057143.1

Conserved Domains (1) summary

pfam00046
Location:218 → 270

Homeobox; Homeobox domain
NM_001397963.1 → NP_001384892.1 homeobox protein Hox-B1 isoform 2

Status: VALIDATED

Description

Transcript Variant: This variant (3) is intronless. The encoded protein is C-truncated relative to other avian orthologs.

Source sequence(s)

JAENSK010000364

RNA

NR_174027.1 RNA Sequence

Status: VALIDATED

Description

Transcript Variant: This variant (2) has the short intron which introduces a translation termination in the first exon. Thus the transcript is a NMD candidate.

Source sequence(s)

JAENSK010000364