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WNT5A Wnt family member 5A [ Gallus gallus (chicken) ]

Gene ID: 395703, updated on 17-Aug-2024

Summary

Symbol
WNT5Aprovided by CGNC
Full Name
Wnt family member 5Aprovided by CGNC
Primary source
CGNC:4029
See related
Ensembl:ENSGALG00010027875
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
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Genomic context

See WNT5A in Genome Data Viewer
Location:
chromosome: 12
Exon count:
7
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 12 NC_052543.1 (8082567..8096301, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 12 NC_052584.1 (8109561..8123282, complement)

Chromosome 12 - NC_052543.1Genomic Context describing neighboring genes Neighboring gene calcium voltage-gated channel auxiliary subunit alpha2delta 3 Neighboring gene uncharacterized LOC124417170 Neighboring gene uncharacterized LOC121106677 Neighboring gene ELKS/RAB6-interacting/CAST family member 2 Neighboring gene coiled-coil domain containing 66 Neighboring gene family with sequence similarity 208 member A

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from PubChem

General gene information

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cytokine activity IEA
Inferred from Electronic Annotation
more info
PubMed 
enables frizzled binding IEA
Inferred from Electronic Annotation
more info
PubMed 
Process Evidence Code Pubs
involved_in canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in cell fate commitment IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in neuron differentiation IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
PubMed 

General protein information

Preferred Names
protein Wnt-5a
Names
Protein Wnt
Wnt-5a
wingless-type MMTV integration site family, member 5A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001396502.1NP_001383431.1  protein Wnt-5a isoform 1

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000252
    UniProtKB/TrEMBL
    A0A2C9NTD5
    Conserved Domains (1) summary
    cd19347
    Location:74396
    Wnt_Wnt5a; Wnt domain found in protein Wnt-5a and similar proteins
  2. NM_001396503.1NP_001383432.1  protein Wnt-5a isoform 3 precursor

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000252
    UniProtKB/TrEMBL
    A0A2C9NTD5
    Conserved Domains (1) summary
    cl38924
    Location:54376
    Wnt; Wnt domain found in the WNT signaling gene family, also called Wingless-type mouse mammary tumor virus (MMTV) integration site family
  3. NM_001396504.1NP_001383433.1  protein Wnt-5a isoform 4 precursor

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000252
    UniProtKB/TrEMBL
    A0A2C9NTD5
    Related
    ENSGALP00010041305.1, ENSGALT00010067562.1
    Conserved Domains (1) summary
    cd19347
    Location:54365
    Wnt_Wnt5a; Wnt domain found in protein Wnt-5a and similar proteins
  4. NM_001396505.1NP_001383434.1  protein Wnt-5a isoform 4 precursor

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000252
    UniProtKB/TrEMBL
    A0A2C9NTD5
    Conserved Domains (1) summary
    cd19347
    Location:54365
    Wnt_Wnt5a; Wnt domain found in protein Wnt-5a and similar proteins
  5. NM_204887.2NP_990218.1  protein Wnt-5a isoform 2

    See identical proteins and their annotated locations for NP_990218.1

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000252
    UniProtKB/TrEMBL
    A0A2C9NTD5, F1NX78, Q9YGX6
    Related
    ENSGALP00010041307.1, ENSGALT00010067564.1
    Conserved Domains (1) summary
    pfam00110
    Location:80385
    wnt; wnt family

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052543.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    8082567..8096301 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052584.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    8109561..8123282 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)