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GC GC vitamin D binding protein [ Gallus gallus (chicken) ]

Gene ID: 395696, updated on 23-Sep-2023

Summary

Official Symbol
GCprovided by CGNC
Official Full Name
GC vitamin D binding proteinprovided by CGNC
Primary source
CGNC:8824
See related
Ensembl:ENSGALG00010004358
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
VTDB
Orthologs
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Genomic context

Location:
chromosome: 4
Exon count:
18
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 4 NC_052535.1 (49867662..49911479, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 4 NC_052576.1 (49871797..49915656, complement)

Chromosome 4 - NC_052535.1Genomic Context describing neighboring genes Neighboring gene deoxycytidine kinase Neighboring gene solute carrier family 4 member 4 Neighboring gene uncharacterized LOC107051724 Neighboring gene uncharacterized LOC100858497 Neighboring gene neuropeptide FF receptor 2

Genomic regions, transcripts, and products

General gene information

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables vitamin D binding IEA
Inferred from Electronic Annotation
more info
PubMed 
enables vitamin transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
PubMed 
Process Evidence Code Pubs
involved_in vitamin transport IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
located_in blood microparticle IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
PubMed 

General protein information

Preferred Names
vitamin D-binding protein
Names
group-specific component (vitamin D binding protein)
vitamin-D binding protein
NP_990213.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_204882.2NP_990213.1  vitamin D-binding protein precursor

    See identical proteins and their annotated locations for NP_990213.1

    Status: PROVISIONAL

    Source sequence(s)
    JAENSK010000074
    UniProtKB/TrEMBL
    A0A8V0XMC3, Q9W6F5
    Related
    ENSGALP00010005944.1, ENSGALT00010010174.1
    Conserved Domains (3) summary
    cd00015
    Location:27206
    ALBUMIN; Albumin domain, contains five or six internal disulphide bonds; albuminoid superfamily includes alpha-fetoprotein which binds various cations, fatty acids and bilirubin; vitamin D-binding protein which binds to vitamin D, its metabolites, and fatty acids; ...
    pfam00273
    Location:221387
    Serum_albumin; Serum albumin family
    pfam09164
    Location:407471
    VitD-bind_III; Vitamin D binding protein, domain III

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052535.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    49867662..49911479 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_005859116.2 RNA Sequence

  2. XR_005859112.2 RNA Sequence

  3. XR_005859114.2 RNA Sequence

  4. XR_005859113.2 RNA Sequence

  5. XR_005859115.2 RNA Sequence

  6. XR_006939030.1 RNA Sequence

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052576.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    49871797..49915656 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_006934336.1 RNA Sequence

  2. XR_006934331.1 RNA Sequence

  3. XR_006934334.1 RNA Sequence

  4. XR_006934332.1 RNA Sequence

  5. XR_006934333.1 RNA Sequence

  6. XR_006934335.1 RNA Sequence

  7. XR_006934330.1 RNA Sequence