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SOX10 SRY-box 10 [ Gallus gallus (chicken) ]

Gene ID: 395573, updated on 17-Aug-2024

Summary

Symbol
SOX10provided by CGNC
Full Name
SRY-box 10provided by CGNC
Primary source
CGNC:49382
See related
Ensembl:ENSGALG00010010407
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
SOX-10
Orthologs
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Genomic context

See SOX10 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
4
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (51095091..51104261)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (51391852..51401022)

Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene protein interacting with PRKCA 1 Neighboring gene uncharacterized LOC107053682 Neighboring gene RNA polymerase II subunit F Neighboring gene C22orf23 homolog

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General protein information

Preferred Names
transcription factor SOX-10
Names
SRY (sex determining region Y)-box 10
Sry-boxntranscription factor, SOX-10
cSOX10

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_204792.2NP_990123.1  transcription factor SOX-10

    See identical proteins and their annotated locations for NP_990123.1

    Status: PROVISIONAL

    Source sequence(s)
    JAENSK010000012
    UniProtKB/Swiss-Prot
    Q9W757
    Conserved Domains (2) summary
    cd01388
    Location:97167
    SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...
    pfam12444
    Location:1287
    Sox_N; Sox developmental protein N terminal

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    51095091..51104261
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015284463.4XP_015139949.1  transcription factor SOX-10 isoform X1

    UniProtKB/TrEMBL
    A0A8V0YDU2
    Related
    ENSGALP00010014122.1, ENSGALT00010024883.1
    Conserved Domains (2) summary
    cd01388
    Location:178248
    SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...
    pfam12444
    Location:93168
    Sox_N; Sox developmental protein N terminal

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    51391852..51401022
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046906645.1XP_046762601.1  transcription factor SOX-10 isoform X1

    UniProtKB/TrEMBL
    A0A8V0YDU2