U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

COL4A1 collagen type IV alpha 1 chain [ Gallus gallus (chicken) ]

Gene ID: 395530, updated on 5-Mar-2024

Summary

Official Symbol
COL4A1provided by CGNC
Official Full Name
collagen type IV alpha 1 chainprovided by CGNC
Primary source
CGNC:12637
See related
Ensembl:ENSGALG00010014128
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See COL4A1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
54
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (138807413..138920608, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (138806802..138919798, complement)

Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101749095 Neighboring gene uncharacterized LOC121108999 Neighboring gene collagen type IV alpha 2 chain Neighboring gene uncharacterized LOC124418400 Neighboring gene RAB20, member RAS oncogene family

Genomic regions, transcripts, and products

General protein information

Preferred Names
collagen alpha-1(IV) chain
Names
collagen IV a1 chain
collagen, type IV, alpha 1

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001162399.4NP_001155871.2  collagen alpha-1(IV) chain precursor

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000025
    Related
    ENSGALP00010019954.1, ENSGALT00010033954.1
    Conserved Domains (3) summary
    PHA03169
    Location:216359
    PHA03169; hypothetical protein; Provisional
    pfam01391
    Location:272328
    Collagen; Collagen triple helix repeat (20 copies)
    pfam01413
    Location:15561666
    C4; C-terminal tandem repeated domain in type 4 procollagen

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    138807413..138920608 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046904336.1XP_046760292.1  collagen alpha-1(IV) chain isoform X1

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    138806802..138919798 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046906625.1XP_046762581.1  collagen alpha-1(IV) chain isoform X1

  2. XM_046906624.1XP_046762580.1  collagen alpha-1(IV) chain isoform X2