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CLSTN1 calsyntenin 1 [ Gallus gallus (chicken) ]

Gene ID: 395372, updated on 13-Apr-2026
Symbol
CLSTN1provided by CGNC
Full Name
calsyntenin 1provided by CGNC
Primary source
CGNC:1874
See related
Ensembl:ENSGALG00010017060
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
CALSYNTENIN-1
Orthologs
all
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Try the new Transcripts and proteins table
See CLSTN1 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
20
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 21 NC_052552.1 (3489329..3523966, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 21 NC_052593.1 (3522624..3557248, complement)

Chromosome 21 - NC_052552.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 201 Neighboring gene forkhead box protein D1 Neighboring gene phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta Neighboring gene uncharacterized LOC121107382 Neighboring gene catenin beta interacting protein 1 Neighboring gene leucine zipper and CTNNBIP1 domain containing Neighboring gene nicotinamide nucleotide adenylyltransferase 1

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Calsyntenin 1-mediated trafficking of axon guidance receptors regulates the switch in axonal responsiveness at a choice point. Alther TA, et al. Development, 2016 Mar 15. PMID 26839361
  2. Calsyntenin-1, a proteolytically processed postsynaptic membrane protein with a cytoplasmic calcium-binding domain. Vogt L, et al. Mol Cell Neurosci, 2001 Jan. PMID 11161476
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. calsyntenin 1-mediated trafficking of frizzled 3, a guidance receptor in the Wnt pathway, is independent of RabGDI.
    Title: Calsyntenin 1-mediated trafficking of axon guidance receptors regulates the switch in axonal responsiveness at a choice point.
Submit: New GeneRIF Correction

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables X11-like protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables amyloid-beta binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables kinesin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of synapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
calsyntenin-1

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001197050.2 → NP_001183979.1  calsyntenin-1 precursor

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000329
    UniProtKB/TrEMBL
    E1BYQ5, Q9DDD3
    Related
    ENSGALP00010024120.1, ENSGALT00010041204.1
    Conserved Domains (1) summary
    cd11304
    Location:34 → 152
    Cadherin_repeat; Cadherin tandem repeat domain

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052552.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    3489329..3523966 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015296823.4 → XP_015152309.1  calsyntenin-1 isoform X3

    UniProtKB/TrEMBL
    Q9DDD3
    Conserved Domains (1) summary
    cd11304
    Location:34 → 142
    Cadherin_repeat; Cadherin tandem repeat domain

  2. XM_015296821.4 → XP_015152307.1  calsyntenin-1 isoform X1

    UniProtKB/TrEMBL
    A0A8V0YZ96, Q9DDD3
    Related
    ENSGALP00010024122.1, ENSGALT00010041206.1
    Conserved Domains (1) summary
    cd11304
    Location:34 → 142
    Cadherin_repeat; Cadherin tandem repeat domain

  3. XM_015296822.4 → XP_015152308.1  calsyntenin-1 isoform X2

    UniProtKB/TrEMBL
    A0A8V0YZM5, Q9DDD3
    Related
    ENSGALP00010024114.1, ENSGALT00010041196.1
    Conserved Domains (1) summary
    cd11304
    Location:34 → 152
    Cadherin_repeat; Cadherin tandem repeat domain

  4. XM_040651096.2 → XP_040507030.1  calsyntenin-1 isoform X4

    UniProtKB/TrEMBL
    Q9DDD3
    Conserved Domains (1) summary
    cd11304
    Location:34 → 152
    Cadherin_repeat; Cadherin tandem repeat domain

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052593.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    3522624..3557248 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046931139.1 → XP_046787095.1  calsyntenin-1 isoform X3

    UniProtKB/TrEMBL
    Q9DDD3

  2. XM_046931137.1 → XP_046787093.1  calsyntenin-1 isoform X1

    UniProtKB/TrEMBL
    Q9DDD3

  3. XM_046931138.1 → XP_046787094.1  calsyntenin-1 isoform X2

    UniProtKB/TrEMBL
    Q9DDD3

  4. XM_046931140.1 → XP_046787096.1  calsyntenin-1 isoform X4

    UniProtKB/TrEMBL
    Q9DDD3
Nucleotide Protein Strain
Heading Accession and Version

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